HsaALTA1051910-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000187045 | TMPRSS6
Description
transmembrane protease, serine 6 [Source:HGNC Symbol;Acc:HGNC:16517]
Coordinates
chr22:37070916-37073645:-
Coord C1 exon
chr22:37073532-37073645
Coord A exon
chr22:37071004-37071032
Coord C2 exon
chr22:37070916-37071003
Length
29 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
CCCCATCCCCTCTGTCCCAGGGG
3' ss Score
8.28
Exon sequences
Seq C1 exon
TTTGCAGAGCCACATTCCAGTGCAAAGAGGACAGCACATGCATCTCACTGCCCAAGGTCTGTGATGGGCAGCCTGATTGTCTCAACGGCAGCGACGAAGAGCAGTGCCAGGAAG
Seq A exon
GGGTGCCATGTGGGACATTCACCTTCCAG
Seq C2 exon
TGTGAGGACCGGAGCTGCGTGAAGAAGCCCAACCCGCAGTGTGATGGGCGGCCCGACTGCAGGGACGGCTCGGATGAGGAGCACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187045-25-29,25-28-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=92.3)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=95.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGCATCTCACTGCCCAAG
R:
GGTTGGGCTTCTTCACGCAG
Band lengths:
113-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains