MmuALTA1004780-3/5 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000016942 | Tmprss6
Description
transmembrane serine protease 6 [Source:MGI Symbol;Acc:MGI:1919003]
Coordinates
chr15:78444099-78445397:-
Coord C1 exon
chr15:78445284-78445397
Coord A exon
chr15:78444184-78444212
Coord C2 exon
chr15:78444099-78444183
Length
29 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CTCGGTCCCCTCCATCCCAGGAG
3' ss Score
7
Exon sequences
Seq C1 exon
TCTGCAGAGCCATGTTCCAGTGCCAAGAGGACAGCACGTGCATTTCACTGCCTAGAGTCTGTGACCGGCAGCCCGACTGTCTCAATGGCAGTGACGAAGAACAGTGCCAAGAAG
Seq A exon
GAGTGCCCTGTGGGACATTCACTTTCCAG
Seq C2 exon
TGTGAGGACCGGAGCTGTGTGAAGAAGCCCAACCCAGAGTGTGACGGCCAGTCAGATTGCAGAGACGGCTCAGATGAGCAACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016942-21-24,21-23,21-22,21-21,21-20-3/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=92.3)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=95.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCAGTGCCAAGAGGACAG
R:
CTTCTTCACACAGCTCCGGTC
Band lengths:
128-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types