RnoALTA0041419-3/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000000184 | Tmprss6
Description
transmembrane serine protease 6 [Source:RGD Symbol;Acc:1307138]
Coordinates
chr7:119663671-119664627:-
Coord C1 exon
chr7:119664514-119664627
Coord A exon
chr7:119663759-119663787
Coord C2 exon
chr7:119663671-119663758
Length
29 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
CCCGGTCCCCTCCATCCCAGGAG
3' ss Score
7.73
Exon sequences
Seq C1 exon
TCTGCAGAGCCATGTTCCAGTGCCAAGAGGACAGCACGTGCATCTCACTGCCGAGAGTCTGTGACCGGCAGCCCGACTGTCTCAATGGTAGCGACGAAGAGCAGTGCCAAGAAG
Seq A exon
GAGTGCCCTGTGGGACATTCACTTTCCAG
Seq C2 exon
TGTGAGGACCGGAGCTGTGTGAAGAAGCCCAACCCCGAGTGTGACGGGCAGGCAGACTGCAGGGATGGCTCGGATGAGGAGCACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000184-17-21,17-20,17-19,17-18-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=92.3)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=95.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCAGTGCCAAGAGGACAG
R:
CTTCTTCACACAGCTCCGGTC
Band lengths:
128-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]