HsaALTA1052242-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000187815 | ZFP69
Description
ZFP69 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:24708]
Coordinates
chr1:40489088-40489624:+
Coord C1 exon
chr1:40489088-40489214
Coord A exon
chr1:40489526-40489528
Coord C2 exon
chr1:40489529-40489624
Length
3 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
TGTTTTTTTTACTACATAAGCAG
3' ss Score
-0.61
Exon sequences
Seq C1 exon
GAATTGTTGACTTTCAAGGACATATCTATTGACTTCACCCAGGAAGAGTGGGGGCAGCTGGCTCCTGCTCACCAGAATCTATACCGAGAGGTGATGCTGGAGAACTACAGCAACTTGGTGTCAGTGG
Seq A exon
CAG
Seq C2 exon
GATATCAACTTTCCAAACCTAGTGTGATATCCCAGTTAGAGAAAGGAGAAGAGCCATGGATGGCAGAGAAAGAAGGCCCAGGAGATCCCAGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187815-4-11,4-10-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.606
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAGGTGATGCTGGAGAAC
R:
CCATCCATGGCTCTTCTCCTT
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains