HsaALTA1053921-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000197302 | ZNF720
Description
zinc finger protein 720 [Source:HGNC Symbol;Acc:HGNC:26987]
Coordinates
chr16:31722626-31723353:+
Coord C1 exon
chr16:31722626-31722752
Coord A exon
chr16:31723061-31723257
Coord C2 exon
chr16:31723258-31723353
Length
197 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TCTCCTTATTTTTGATTTAGTCA
3' ss Score
7.34
Exon sequences
Seq C1 exon
GGACTGTTGACATTCAGGGATGTGGCCATAGAATTCTCTCGGGAGGAGTGGGAACACCTGGACTCAGATCAGAAGCTTTTATATGGGGATGTGATGTTAGAGAACTACGGAAACCTGGTCTCTCTGG
Seq A exon
TCATACTTGGAAGTGAAGCTCAGGATTCCTGTGTTTAAAATGCTTCCTGAATATTCTAAAGAAGCTGACAGGAAACAGTATTTGGGGAAGTAATTTTCTAGGATCCTCTATAATGTTCCCTCTTTACTGAGTATCCTACTGAGCTGGCAATTAAAGAACTCCCAGCAAGAGTCATGTGACTTTTTCTAATAAAACAG
Seq C2 exon
GTCTCGCTGTCTCTAAGCCGGACCTGATCACCTTTTTGGAGCAAAGGAAAGAGCCCTGGAATGTGAAGAGTGCAGAGACAGTAGCCATCCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197302-15-5,15-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGACATTCAGGGATGTGGC
R:
TGGCTGGATGGCTACTGTCTC
Band lengths:
218-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains