HsaEX0074262 @ hg38
Exon Skipping
Gene
ENSG00000197302 | ZNF720
Description
zinc finger protein 720 [Source:HGNC Symbol;Acc:HGNC:26987]
Coordinates
chr16:31713229-31723353:+
Coord C1 exon
chr16:31713229-31713448
Coord A exon
chr16:31722626-31722752
Coord C2 exon
chr16:31723258-31723353
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCTATTTATTTTTATTTCAGGGA
3' ss Score
7.66
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
GCAGGGGCGGCTTCCGGGATTTGGCGGTGGCCTTTGTTGGCTGCAGTAAGAGCTCAGTCTCTTCACCAGGGGCTCCCAGTCCTTCCATCTGGGAGGCCAAGGCGGCTTCGCGTTCTGAGAATAGACAGAACCTCTGTTACTCTGTGACCGGCAGGCACCGGGAGATCCGTAGCTCAGACGCCAGGACATCCCGGAAGCTGGGAAATGGTGAATGTGCCAG
Seq A exon
GGACTGTTGACATTCAGGGATGTGGCCATAGAATTCTCTCGGGAGGAGTGGGAACACCTGGACTCAGATCAGAAGCTTTTATATGGGGATGTGATGTTAGAGAACTACGGAAACCTGGTCTCTCTGG
Seq C2 exon
GTCTCGCTGTCTCTAAGCCGGACCTGATCACCTTTTTGGAGCAAAGGAAAGAGCCCTGGAATGTGAAGAGTGCAGAGACAGTAGCCATCCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197302-'1-5,'1-3,15-5
Average complexity
C2
Mappability confidence:
100%=93=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.043
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCAGTAAGAGCTCAGTC
R:
TTCCAGGGCTCTTTCCTTTGC
Band lengths:
243-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development