HsaINT0188236 @ hg38
Intron Retention
Gene
ENSG00000197302 | ZNF720
Description
zinc finger protein 720 [Source:HGNC Symbol;Acc:HGNC:26987]
Coordinates
chr16:31713234-31722752:+
Coord C1 exon
chr16:31713234-31713435
Coord A exon
chr16:31713436-31722625
Coord C2 exon
chr16:31722626-31722752
Length
9190 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAAT
5' ss Score
3.54
3' ss Seq
GCTATTTATTTTTATTTCAGGGA
3' ss Score
7.66
Exon sequences
Seq C1 exon
GGCGGCTTCCGGGATTTGGCGGTGGCCTTTGTTGGCTGCAGTAAGAGCTCAGTCTCTTCACCAGGGGCTCCCAGTCCTTCCATCTGGGAGGCCAAGGCGGCTTCGCGTTCTGAGAATAGACAGAACCTCTGTTACTCTGTGACCGGCAGGCACCGGGAGATCCGTAGCTCAGACGCCAGGACATCCCGGAAGCTGGGAAATG
Seq A exon
GTGAATGTGCCAGGTCGGGGGTCCCCAGAAGAGGGAGAGGGGCGGTCGGAAGCGGCGGGAACCCTCTTTGAGGTTAGCTTCGGGGTCTGGGCCCTGAGTCCCCGCGGACGCAACTCGGCCCTTGGTCCCCTCCGCCGCAAGATGGCGGCCGGGCCGGCAGCCGGGACCCCGCGCGTCCGGTCCCCTCCCGACCCCGCAGAGCGACCTCTGCCATGGCCGGAGCCGTCTTTGGGTCGCCGCAGCCCGGCGTCTCCCGAGATTGTGCGGTGAGAACGTGAGGGTCTTAGGGGAAATCCCGGGTCGGCGTGTGATTCGTGTGTGGGAAGATACTGTGCCCCGTGGTGTCCCAGTCTCCTTTTTCCTCTTACAAATTAAGGGGAGTCACCCTTAAAGCGTTAAAGGGTTGATTTAGGTAAACAGCGATTGGTGAAATGGGAAGCCTGCCGCCGTGGTTTGTGGTTTAGGGTCCTCTGGAGCAGCGATTTCAAAATCCCAGGGCTCAGCTTAGGAATGCTGCTGGGGAAAAGAAATAGGGACAATCTCTCTTCCACTTTGGCTGTAGAAAACGAATACATTTCCACAGAAAGTGTGCTAGATTAATTGGTCAATTACAAACATTCATTAAAATATCAGGTCCTCTCTTTTGCAGTGGAGGATTTGTGACAGTGGATATCTGTGTTCCATATTCTACTGCTATCTGGATGTCCGACTTTAATGCCAAATGTTATGAGACAGGACTTGGCACCTCCTAGAAGTGTTCACATATACTAAATGATCTGCTATTATGGAAATAATTAAATGACATGTTTCTTGCTCGAAAGAGGTATTTTGGCCTTACCTGTTGAAGTATAAAGTGTAAGTGCCTTACAGTTTCCTTCCTTTCTATAAAAACTGTTTTGAGTGATTTTGCTATTTTCCTGAAACCTGTTAGGTCACTGAACATCTGACTGGCTGGGCACCTGCTCCTGTCCCTTCAGTTGAGGTAGGATTGGCAGCACTCCCCAGAAGGCGTGCAGTGCCAGGAGAGTGGAGGAAGGTCTGACGTTTGCTATCCTGGGGTAGGTTTTAGAGCTCGCTAGATGCTTGTGGAGAGCTGATGAGATGGGAAGAAGGCACCCCACCTCGATGGACCTGAAAGAGAGAGCCTGCGAATTGAGAAGCGGGTGTGTGGAATAACCCTGACTAGGCATAGAAGACCTCAGTCTTATTTGAGCCTGCAAAAGGAGGTCATTGAAGGCCCAGTTAGTTCTTCCTGGGGAGCGCCCCCTTCAGGTGTCCCTGAGGTTCACAGCAGCCATGGAGGGAGCCCTTTGTTACTGGGAGAAGCTGCAGAGTTCTGGAAAGCAGGGGATTCACAGGCGGATGTGGTCGAGGTTGGGCTGGAAGGGAGATTGGGAAGCTCTTTCTGAGGGTGGAATTGTTAGTGTCCTGGGGCTGTTTCTTGACTTGGTCAAATAAAACATCTGGATATAGGTAAGAAGTGCCTTAATTGTAAAGGAGTATTGCAAGAGGAGGAAAGCACCAACTGTAAGATATTTGTGGATCTCACAGTTGAAGCAGAAAAGGCCTTTCTTTCATAGGGAGGAGCAAACATGATTCAAGGTGGGAGGGGAAGGGCACGACTCCTGGACTAAATCAGATCCCTGATCAGAGAATGTTTCACCCTGAAGTCAGCCTGTTCTTAGGAGGGGCATAAAGAGGGGTTGAATGTTGACTCAGGCTGTGGGTGGGACAAACCTCAGGCACCTTGGAGAAGGGGAGAAATTTAAGCAACTTTGGTTAACACATATTTTGTTTTGACCATCGAAGATAAAACTCTTTATTTAATTGCTTATGAGGGGGAAAAAAAGGAAATAGGAGAGTTTGTGGCTTTGTGATACCTAAAACAGGGAGCATCATCTAAGTCATAACAGGAAGAAGATTCTTTGCAGTAAGCTGCTCTTGAAGAACAAAAAGGAAGGGGGATTTCTTTCATCACAGCTGCTTCCCAGGGTTAACTACCTACTCCATCTTTTCCCCACTCCTTTCTCTTGCCCTACACATCTCTTCCATTAGGCTGAGTTGTATCTTTTATAATAAACTGGTCAATGCAATTACAGTCTTTGCTGAGTTCTGTGAATCCTTGTATAAAATTAATGAACTTGAGTAGGGTATTATGGGAGGCCCTAACTTACAGGCAGTAGCTCAGAAGTATAGATGGCCCCTGGGGAATTGTGACTGGCATCTGTAGAGGGGCAGTGTTGTGGCACTGAACTCTGAACTTGTGGGGTCTGTGCTGCCTCTGGGTGCTGTCAGAATTGAGTTGTTGGACAACCAGTTGGTGTTGGAGAATTGGCTGGTGTTCAGCAAACTCCACACAGTGTCATAAAAAAGATAGCACAGGGACCTGGGCTGGAGAGAGACTCTGGGTGTCTCCAGGAAGGGAGGCTGTATTCCCCTGCACACAGACTGTCACCCTACACATTGTCCTGTGATTCCACGTCTCCTCCCAGGGTGAGAAGCGACTGAGGACAGAAAGGGAAGAAGTTCTGAGAACAGACCCCTGCCCCCACTGTGCTGCCACCACATAATTCCCACCCACTCTGAACACACCCACTAGGCACTGGCGTCGCCATGCCCCTTTCAGGACAAGACATGACCCTCAGGAATTGTGCCCATAGCACCTTTGCTCCTAGAGTTTCCTGCCAAAATTCCCATACAGGTGCCTAGAGGACTCCTGGCTTATCCTTGCCCCCAGACCCTGAAACTGCAGCAGCAACCCAGTCCCTCCATCAACCTAGGCTTGTGGACCACCCAGTCATAGTCTCATCTGCCTGCATGGACACAGGAGTAAGTCAGAGCATAGCCTTGCCTGGGCCAGTATCTGTAGCACAAACCAGTCCTTCCACCAGTTCTGCACTGCCCCCCATGTGAGAGTTCTTAGTAGCACCTTCCCTTCTGCCTTTTAACTTCCCCACAAACCCTGACAGGGTCTCTCACTGTGTCGCCCAGGCTGGAGTGCAGTGGCATGATCATGCAGTCTTGACGTCCCTGGGCTCAGGTGATCCTCCCACCTCAGCCTCCCCAATCACTGGGACTGGAGGCATGTGCCCCCCACACCTGGCTAATTTTTGCAATTTTTGTAGAGACAGGGAGGGTCTCAATATGTTGCCCAGGCTCATCACGAACTCCTGGGCTCAAGTGATCCACCTGCCTCTGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGCCTGGCCCACAAACCCCTTTTTATGTGCATGCGGTGTGTCCAAGGCAAATCCTCAGGTGCCTGAATCTAGCGCCTGCTGGAATTCAGATGTCCATTAATTCAAGATTATGGCCCTAGATCTCCCAGTTGTGAGAACAAATACAAATTAAAAATATGAGACTTAACTCTTCTTGAAAATAAGGGAAGACATATTTCTCTCCTTCTTTTTCTTGAATCATTTACTTTAGAGAATTTTTGTATGTAAGTTTTTTTCTGCCTTTTGGAAATATGTCTAAATCATTGTAACAGCTAAACAGATCTTTTGTCTTTTGTCAGTCAGTCTTTGTTTTTTTTTTTTTTTTTTTTTTTGAGTCTTGCTGTGTTGCCCAGGCTGGAGTGCAGTGGTGCGTTCTTGGCTCACTGCAACCTCTGCCTCTTGGGTTCAAGCGATTCTCCTGCCTAGCCTCCCAAGTAGCTGGGATTATAGGTGCCTGCCACCACACAGGGCTAGTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGTCCAGGCTGGTCTCAAACTCCTGACTTCAGGTGATCTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCTGGCTGTCAGTTTTTGATTCGGGACATTCTTTCTCTAGGACTGGGAATCATTGATTTGAACTATAGGTAGCAAAGAAGATAGAGCCGTATCTTACAGTTTCTTTAGGAGAGCAGGCATCTACCTTCAGGCCCCTGGCTCCAAGTTGCAAATGTACCTACCTGTCTTGAAGACATGAAGTTTATTTTTCCTTTAACTATATAGCCAAATAAAAACCACAGATGGCCTCCCAATTCCCAGGTGAATTTAGGATGAACTCTTATCTGACAAATGGTGCTGTCAGGTCTTCTATTGAGGACTAATTATGGTGACTTTTCATGAGTGAGTGTTTTTCCAATCTCTTAGCAGATTGCCTGTAATGTCCTTCACATTCTGGTCTCATTGTGTCATAGAACAGTTTTCTTTCGTTTCTACCATTGTGCATCATTTTTCTCATGATTCTGTTTTTAATTATATTTCCCAAACACTGAGAAATGTAAGGTGCCCACCAGGCCTCACTCTAGAGGGGATGTTCCCTCTAAGACTTCCTGTCACAACCCACATTTGTGCAGCAAAGTGCCTATTGCCCCGAAAATCTGCAGGCAGAATGGTCTTTCTGCTTGTTTGGAATCTTTAATCCCTTCTAGAAGAGTTTGGCCAGATTTCTACAAAAATAAGTTCACAGGGCATCAGTTAGCCATTCCAGCTCTGTCTTTCCATGCCCCTGGCATCTTCAGACCTGAAACCGATTCAGAGACCATGGGGGCTGGAAACCAACCAGGCACACACATGCATTGAGTAGGCCTGAGAATCTCAACATTCCCCTCATCCTCTTGCCCAAATGCCCATGAATGTGCAGAAGGTGCGTGCCACTTCTCTGCCCCTCCAGCACCTAAATCTGTAGCTCCAAATGTTGAACCCAGGTCCTGGGGTTCTCCAGGATGTGTGAGAGCAGAATTCCTGAGGGGCTGTCTCCTCTAGTTTTCTTCACAGCAACACCCAAGAATGCAGAGCCAGGTTGATTCCACCTGGAGTCTGCACATAAAGGCTGGTCTCCACCTGGGATCCACAAGACAGGGCCAGACTTTGGACTGAGGATGTATAGAAAATCCAGGGGACATTTTCTGCATTATGAGAGATTGACATAGACCTTGTAAAGCCCTACTTTTTGTGTGGGGTCTTTTAAGTTTTCCAGATCTTGTCCAGTGAGCTGCTGCAGTTCTGTGAGGGCCTTCTGGTCTAAGCAGAACATGGTGGCAGAATCTGTAAGTGTAAAGCAGCACCTTAGCAGAGGGAGGGCAGGGCCACAACTGTCCAGAGCCGTGAGTGAAGCTACACCTACCTGTGAGCTGTGTTACTGGAGTAGGGTAATCTTGTCCTTTCTTGTACCCAAGAGTTAGCTGATCAGGTATAGGTAATACTACACGTGGATCCAGAATCTGTGGCTCCACTGGGGCAGTTCCACTTTGTATCCTGGCCCCACAGAGTCAGCCTGAGTCTCTCCTGCCCAAATCACTACTGGGGCATCAGTACAGGATCACCAGGAACTCCCTCACCAGCACCTTGGAGTCCTTGGGACATTTGGTGATGTCCTGTGCAGACTGAGGTCAGGCTGACAACAGGGTCTAATTTCTTTCCATCTCAGAAGGAAAGGAATGCATCATCCAGGATTTGTTCCTCCACTCACAGAAGGAATCTCTTTATTTGGTATCCAAATGGGATTTGCTCCAGTTTTCTAATACGTGGACGAAGAACAAAGAGGAGTTCTGGAGACTCATACTGATAGGTAAACCAATTGCTTCCATTTCATATGGCCATTAGAAAAACATTTGTAGCAGCCATAGTCCCTACCATCTGGGAACTTTCAGTCTAGAGCAGATGGATAATGGCCAAATTCAGCATCATGTGATCCGGTGCAAGCACGGAGGTATACAGGGAACTTGGGCTTGATTTGGGACACTGTCCTTATTTGACCTTGTGAGTTCTGATGTCACAATCTGAAGGGCCACCCATGGACAGAAGAGTTGTTATTATTATTTCTATTGATTTTCTCTTGATTTGCTTTTTAATATAATTTTCCCAGAAGGCCCTACATGTTTTGATTAAATTGCTTGTTAATGGATTTACAAAATACTTAAGGATGAAACAAACAGTTAAAATCAGAAAAACTCTGGGAGTCAAGTTCTTGTGGTCAAAAATCAGAAAAACTCTGGGAGTCAAGTTCTTGTGGCCAGGCTTAGGAAAGACAGGACTTAAATCAGCAACATAGAGATGGGAAGCCTAGGGCCTGACCCGTGTCCCTAGCCTTGCTCTGCCCCAACCCTGCCCAAATGCACCCTCTTCTGAGCTTGGTTCAGGTCTGGCCCCACCTTGGAGCCTACCCTCACAGAACTGTTTGTTGGAGATCAGACTTCTGAGTGGTTGCTCTTGCTGGTTCTCCAGAGCTAGTGCTCACAATTTCCCCAAACCCAAAAGCAGTTAAATGGGAGCAAAGGACAATATGGGGGCCTGAATTTTTTTCTTCATTGAGAACAGTGTTTCTAGAGACATCCCACCTGGCAACCTTTTTCCATTCCTGCAGACCCAGTAGTTGCTTCACAAGTAGTAACAAAGTCAATGTAAAGACTACAGTGAGAAATCCTTAAGAACTAAACTTCACCCTTCTTTTCCGTATCTCTCCCATCTGTCTATAGTTAGCTTTTATAGTGACAGGGAAACAGAAGAAGAGAGAGAAAGGCTAGGCCATTATCTAAATCCTGCTGGGAATTATGGGATACTCAGGACCCACATCCCAGGGGTTTATATGGCTTAACTCACACCATGTGATGTTGCCAGCACAGTGCATACTGTGAGCACACAGTACAAGCTCAGTAAACACTGCTTTAATGCATGTATCCATGCTGTTTTCCAAATGCTGACTTAGATGTTACTGTCCTCTCCAGCCTCTGTAGACTTTAAATGGCTGGCAAAGGATGTGATTTTTCAGGACAGTGGTTGGTGGTCCTCGCTGTGAATGAAAAGTATTTGCGTTGTGATTAGAGTATTGGGTGTAAGGGACCCTGTGTTTTGTGCCCGCTTCCTCTAGCTGTGTGCTACTGATTATGGGTCTTAAGCCAATTCATGGAACTTTTCCAAACCTGCAGAATCACAGTACTTAGCACGGGCCCCAGAATACCAAATGATGTGTATGCATATTGAAGCTTGAGAGGGAATGCTTAGTTAAGTGATTCTCAGCTCAGGCTTCTAAGTAGAGTCACATGGCCAGTTTTAAGAAATATGGCCACCTGTATGTTCCTCCACATATTCTGTTTATTATTATACCCAGACTATGATTTACTTTTTTCCCCCACTAATATACAACGATTATGGGTCCATCAGTGCGTGAGCATTGATACCAATTCGTCTCATTACAGTCGATGCTAACTTCATTCACCTGGTTCAGGTGCTCTCTGCCAGATTCCTTCACTAGTTATTTTTCTCTTTGTTGTTAATGTGTTTCTAGGAGGGAGGATTTACTGAGTGATGCATGTAAACCATCATGTTTAATCCAGAGACTGCCATTTCTCTTTAGTTTCCCTTTGCTTGTGGGTTGCTTTGGAGAGTGAAGGCTCTCACATTTGTTGACCGTAAATACTGGTTTTTGAAACTGGAAATTCTGAAACAAGCCTCACTTCTGTAGGTTTCCATTTTAATTTGCTAATTTCACAAGCATACACTCCTTTATTCTCTGTATTTTCAGAGAAAGATAACAACAATTAACATATAATTAATATATCTACTGTCTTAAAATTCTAAAATATAACAGCACTTAGAATAAATAAAAACTTGGGGAAAAGAACTAGACTCAGAAACACAAGCTCTTATTTTAGTTTATGTCATTGAATGTGTTAGTCTTCATAGTTTGTTAAAAAACAGAAAAAGCCATCATCCATATAGTTTTAACACAATTTAAAATATTTCTTAATTAAGAAATGTTCTGTCACTTTTCATGTATGTATAGTTACCATTTCTATGTACGTATGTGCGTGTGACATAAGCATCATTTGATCAGTTTTGTGTTGCTGCCTTCCTGTTTTCATCTTCTTCTCAGTTGTGACACCTGCTCTGAACATTCTTTTTTACTTATCTCTGCATATTGGCCTGTATGTCCCTTTAAAATGAATTCTAAGTTAGATACTGGGGTAAAATAATAAATAAAAAAATAAATAAATATAAATAAATAATAAAATAAGCTCTACTATATACTAGATATTTGGCAAAAAATTTTTTTTCAGGCTTGAGACAGAGAGGGGAAGGGTCAGCAAAATATTTTTATTAAAGAGGAAGAATAGTATTATTTCTCATATAGATTTTTGTGGTTTTTATCAATACATGAAAAACTGCTAGGATGACATCTAGTAAATAGTAAGTGTTCAAAAAGGATTCTACTATTCTTGCTATTATGTTATAACCTGTAAATTTCATAAAACTCTCAATTCCACATCATCCCTGAATTCTTCGTTCAGTGTTCAACCTCTCTGCTATTCAAAAGTGTGGCCTCTGGACCTGAGGCATTGGTGTCACTGGTAAGCTTGTTAAAAATGCGGAAACGCAGCCCCAGCCCCAGCCCCAGATCTCCTGAATCAGAATCTGCATTTGAACCAGTTCTGCAGTTTATTGCTGAACACAATAAAATTTCAGAAGTATGCCTCTAAGTCACCATGACTTTTCCACCTGAGAATTATATACAACTGATTGTGGATGATGTAAATATAGACTAAAAAATGTATACTCCTATGTTGATGCGTTAGTTTTTTGTTTTTTGTTTTTTTGTTTTTGTTTTTTGAGACGGAATTTCGCTCTTGTTGCTCAGGCTGGAGTTCAGTGGTGCAATCTTGGCTCACTGCAACCTCCACTTCCTGGTTCAAGTGATTCTCCTGCCTCAGGTTCCTGAGTAGCTGGGATTACAGGCATGTGCCACCACGCCCAGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCATCATGTTGGCCAGGCTAGTCTCGAACTTAGGTGATCCACCCATCTCGGCATCCCAAAGTGCTGAGATTACAGGTATGAGCTACCGCGCCCGGCCTCGATGCCTTAGTTTTATACTTTATATTCCATATAGGCATAGTATCTACACTGGTTTTGTGGATTTTGTATCATTCTCTTTCCACAGAGTTAGAGAATACATAGAAAATATTATTGTGTTTAAAAGTATCTTATTGAATATTTCAGGTCACTCATATAAATCAGTCAGTTTTCTTAGCTCTCTTATTTCATCTTGGTTTGTCAAGTGATGAACTCTGCCCATGGCCACATGGTCAATGTGCTATTTATTTTTATTTCAG
Seq C2 exon
GGACTGTTGACATTCAGGGATGTGGCCATAGAATTCTCTCGGGAGGAGTGGGAACACCTGGACTCAGATCAGAAGCTTTTATATGGGGATGTGATGTTAGAGAACTACGGAAACCTGGTCTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197302:ENST00000316491:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains