HsaEX1045436 @ hg38
Exon Skipping
Gene
ENSG00000197302 | ZNF720
Description
zinc finger protein 720 [Source:HGNC Symbol;Acc:HGNC:26987]
Coordinates
chr16:31713234-31722752:+
Coord C1 exon
chr16:31713234-31713435
Coord A exon
chr16:31718913-31719053
Coord C2 exon
chr16:31722626-31722752
Length
141 bp
Sequences
Splice sites
3' ss Seq
CTAATTTCTTTCCATCTCAGAAG
3' ss Score
7.15
5' ss Seq
TAGGTAAAC
5' ss Score
5.88
Exon sequences
Seq C1 exon
GGCGGCTTCCGGGATTTGGCGGTGGCCTTTGTTGGCTGCAGTAAGAGCTCAGTCTCTTCACCAGGGGCTCCCAGTCCTTCCATCTGGGAGGCCAAGGCGGCTTCGCGTTCTGAGAATAGACAGAACCTCTGTTACTCTGTGACCGGCAGGCACCGGGAGATCCGTAGCTCAGACGCCAGGACATCCCGGAAGCTGGGAAATG
Seq A exon
AAGGAAAGGAATGCATCATCCAGGATTTGTTCCTCCACTCACAGAAGGAATCTCTTTATTTGGTATCCAAATGGGATTTGCTCCAGTTTTCTAATACGTGGACGAAGAACAAAGAGGAGTTCTGGAGACTCATACTGATAG
Seq C2 exon
GGACTGTTGACATTCAGGGATGTGGCCATAGAATTCTCTCGGGAGGAGTGGGAACACCTGGACTCAGATCAGAAGCTTTTATATGGGGATGTGATGTTAGAGAACTACGGAAACCTGGTCTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197302_MULTIEX1-3/10=C1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.133 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENST00000316491fB30918
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGGCTGCAGTAAGAGCTC
R:
ATCTGAGTCCAGGTGTTCCCA
Band lengths:
242-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains