HsaALTD1042123-2/4 @ hg38
Alternative 5'ss
Gene
ENSG00000197302 | ZNF720
Description
zinc finger protein 720 [Source:HGNC Symbol;Acc:HGNC:26987]
Coordinates
chr16:31713335-31754536:+
Coord C1 exon
chr16:31713335-31713435
Coord A exon
chr16:31713436-31713448
Coord C2 exon
chr16:31753766-31754536
Length
13 bp
Sequences
Splice sites
5' ss Seq
CAGGTCGGG
5' ss Score
4.74
3' ss Seq
AAACTTTTGGTATCTTTCAGATA
3' ss Score
9.14
Exon sequences
Seq C1 exon
TTCGCGTTCTGAGAATAGACAGAACCTCTGTTACTCTGTGACCGGCAGGCACCGGGAGATCCGTAGCTCAGACGCCAGGACATCCCGGAAGCTGGGAAATG
Seq A exon
GTGAATGTGCCAG
Seq C2 exon
ATATCTTTTCTCATGATACTCAAGGCCTCTTAAGAAAGAAGCTTATAGAAGCATCATTCCAAAAAGTGATATTGGATGGATATGGGAGCTGTGGCCCTCAGAATTTAAACTTAAGGAAAGAGTGGGAAAGTGAGGGTAAGTGTGAAGGTCACAATGGATATTATGATGGACATACAAAATGTAAGACAACTACCTATAACAAAAACCTCACTGTTACAGGAGGTCAAAAACATGAAAAAACTCAATTTATGTCAGTTGCTTTTTCTAAACCATGTGTTTCTGTAAGTAAGTGTCAACATCAATTTTTGAAACTTACCTTTTCTTTTAAAGGAAATTTGGATAATCCGAATAGTGACTTAGTCCATGTTTCAAATAATCATTTAAACCAATTAAAATATAGAACTGGAGTAAATGTTCAGTCAAATATTTCTGAAAAGGAGAGATTTAAAAACGAGGAGGTGATTTCTAAATATGATCAATTTGATGGATCTTTGTTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197302-0-15,1-15,2-15,3-15-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.386 A=NA C2=0.041
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTTACTCTGTGACCGGCA
R:
AGAGGCCTTGAGTATCATGAGA
Band lengths:
105-118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains