HsaINT0188236 @ hg19
Intron Retention
Gene
ENSG00000197302 | ZNF720
Description
zinc finger protein 720 [Source:HGNC Symbol;Acc:26987]
Coordinates
chr16:31724550-31734073:+
Coord C1 exon
chr16:31724550-31724756
Coord A exon
chr16:31724757-31733946
Coord C2 exon
chr16:31733947-31734073
Length
9190 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAAT
5' ss Score
3.54
3' ss Seq
GCTATTTATTTTTATTTCAGGGA
3' ss Score
7.66
Exon sequences
Seq C1 exon
GCAGGGGCGGCTTCCGGGATTTGGCGGTGGCCTTTGTTGGCTGCAGTAAGAGCTCAGTCTCTTCACCAGGGGCTCCCAGTCCTTCCATCTGGGAGGCCAAGGCGGCTTCGCGTTCTGAGAATAGACAGAACCTCTGTTACTCTGTGACCGGCAGGCACCGGGAGATCCGTAGCTCAGACGCCAGGACATCCCGGAAGCTGGGAAATG
Seq A exon
GTGAATGTGCCAGGTCGGGGGTCCCCAGAAGAGGGAGAGGGGCGGTCGGAAGCGGCGGGAACCCTCTTTGAGGTTAGCTTCGGGGTCTGGGCCCTGAGTCCCCGCGGACGCAACTCGGCCCTTGGTCCCCTCCGCCGCAAGATGGCGGCCGGGCCGGCAGCCGGGACCCCGCGCGTCCGGTCCCCTCCCGACCCCGCAGAGCGACCTCTGCCATGGCCGGAGCCGTCTTTGGGTCGCCGCAGCCCGGCGTCTCCCGAGATTGTGCGGTGAGAACGTGAGGGTCTTAGGGGAAATCCCGGGTCGGCGTGTGATTCGTGTGTGGGAAGATACTGTGCCCCGTGGTGTCCCAGTCTCCTTTTTCCTCTTACAAATTAAGGGGAGTCACCCTTAAAGCGTTAAAGGGTTGATTTAGGTAAACAGCGATTGGTGAAATGGGAAGCCTGCCGCCGTGGTTTGTGGTTTAGGGTCCTCTGGAGCAGCGATTTCAAAATCCCAGGGCTCAGCTTAGGAATGCTGCTGGGGAAAAGAAATAGGGACAATCTCTCTTCCACTTTGGCTGTAGAAAACGAATACATTTCCACAGAAAGTGTGCTAGATTAATTGGTCAATTACAAACATTCATTAAAATATCAGGTCCTCTCTTTTGCAGTGGAGGATTTGTGACAGTGGATATCTGTGTTCCATATTCTACTGCTATCTGGATGTCCGACTTTAATGCCAAATGTTATGAGACAGGACTTGGCACCTCCTAGAAGTGTTCACATATACTAAATGATCTGCTATTATGGAAATAATTAAATGACATGTTTCTTGCTCGAAAGAGGTATTTTGGCCTTACCTGTTGAAGTATAAAGTGTAAGTGCCTTACAGTTTCCTTCCTTTCTATAAAAACTGTTTTGAGTGATTTTGCTATTTTCCTGAAACCTGTTAGGTCACTGAACATCTGACTGGCTGGGCACCTGCTCCTGTCCCTTCAGTTGAGGTAGGATTGGCAGCACTCCCCAGAAGGCGTGCAGTGCCAGGAGAGTGGAGGAAGGTCTGACGTTTGCTATCCTGGGGTAGGTTTTAGAGCTCGCTAGATGCTTGTGGAGAGCTGATGAGATGGGAAGAAGGCACCCCACCTCGATGGACCTGAAAGAGAGAGCCTGCGAATTGAGAAGCGGGTGTGTGGAATAACCCTGACTAGGCATAGAAGACCTCAGTCTTATTTGAGCCTGCAAAAGGAGGTCATTGAAGGCCCAGTTAGTTCTTCCTGGGGAGCGCCCCCTTCAGGTGTCCCTGAGGTTCACAGCAGCCATGGAGGGAGCCCTTTGTTACTGGGAGAAGCTGCAGAGTTCTGGAAAGCAGGGGATTCACAGGCGGATGTGGTCGAGGTTGGGCTGGAAGGGAGATTGGGAAGCTCTTTCTGAGGGTGGAATTGTTAGTGTCCTGGGGCTGTTTCTTGACTTGGTCAAATAAAACATCTGGATATAGGTAAGAAGTGCCTTAATTGTAAAGGAGTATTGCAAGAGGAGGAAAGCACCAACTGTAAGATATTTGTGGATCTCACAGTTGAAGCAGAAAAGGCCTTTCTTTCATAGGGAGGAGCAAACATGATTCAAGGTGGGAGGGGAAGGGCACGACTCCTGGACTAAATCAGATCCCTGATCAGAGAATGTTTCACCCTGAAGTCAGCCTGTTCTTAGGAGGGGCATAAAGAGGGGTTGAATGTTGACTCAGGCTGTGGGTGGGACAAACCTCAGGCACCTTGGAGAAGGGGAGAAATTTAAGCAACTTTGGTTAACACATATTTTGTTTTGACCATCGAAGATAAAACTCTTTATTTAATTGCTTATGAGGGGGAAAAAAAGGAAATAGGAGAGTTTGTGGCTTTGTGATACCTAAAACAGGGAGCATCATCTAAGTCATAACAGGAAGAAGATTCTTTGCAGTAAGCTGCTCTTGAAGAACAAAAAGGAAGGGGGATTTCTTTCATCACAGCTGCTTCCCAGGGTTAACTACCTACTCCATCTTTTCCCCACTCCTTTCTCTTGCCCTACACATCTCTTCCATTAGGCTGAGTTGTATCTTTTATAATAAACTGGTCAATGCAATTACAGTCTTTGCTGAGTTCTGTGAATCCTTGTATAAAATTAATGAACTTGAGTAGGGTATTATGGGAGGCCCTAACTTACAGGCAGTAGCTCAGAAGTATAGATGGCCCCTGGGGAATTGTGACTGGCATCTGTAGAGGGGCAGTGTTGTGGCACTGAACTCTGAACTTGTGGGGTCTGTGCTGCCTCTGGGTGCTGTCAGAATTGAGTTGTTGGACAACCAGTTGGTGTTGGAGAATTGGCTGGTGTTCAGCAAACTCCACACAGTGTCATAAAAAAGATAGCACAGGGACCTGGGCTGGAGAGAGACTCTGGGTGTCTCCAGGAAGGGAGGCTGTATTCCCCTGCACACAGACTGTCACCCTACACATTGTCCTGTGATTCCACGTCTCCTCCCAGGGTGAGAAGCGACTGAGGACAGAAAGGGAAGAAGTTCTGAGAACAGACCCCTGCCCCCACTGTGCTGCCACCACATAATTCCCACCCACTCTGAACACACCCACTAGGCACTGGCGTCGCCATGCCCCTTTCAGGACAAGACATGACCCTCAGGAATTGTGCCCATAGCACCTTTGCTCCTAGAGTTTCCTGCCAAAATTCCCATACAGGTGCCTAGAGGACTCCTGGCTTATCCTTGCCCCCAGACCCTGAAACTGCAGCAGCAACCCAGTCCCTCCATCAACCTAGGCTTGTGGACCACCCAGTCATAGTCTCATCTGCCTGCATGGACACAGGAGTAAGTCAGAGCATAGCCTTGCCTGGGCCAGTATCTGTAGCACAAACCAGTCCTTCCACCAGTTCTGCACTGCCCCCCATGTGAGAGTTCTTAGTAGCACCTTCCCTTCTGCCTTTTAACTTCCCCACAAACCCTGACAGGGTCTCTCACTGTGTCGCCCAGGCTGGAGTGCAGTGGCATGATCATGCAGTCTTGACGTCCCTGGGCTCAGGTGATCCTCCCACCTCAGCCTCCCCAATCACTGGGACTGGAGGCATGTGCCCCCCACACCTGGCTAATTTTTGCAATTTTTGTAGAGACAGGGAGGGTCTCAATATGTTGCCCAGGCTCATCACGAACTCCTGGGCTCAAGTGATCCACCTGCCTCTGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGCCTGGCCCACAAACCCCTTTTTATGTGCATGCGGTGTGTCCAAGGCAAATCCTCAGGTGCCTGAATCTAGCGCCTGCTGGAATTCAGATGTCCATTAATTCAAGATTATGGCCCTAGATCTCCCAGTTGTGAGAACAAATACAAATTAAAAATATGAGACTTAACTCTTCTTGAAAATAAGGGAAGACATATTTCTCTCCTTCTTTTTCTTGAATCATTTACTTTAGAGAATTTTTGTATGTAAGTTTTTTTCTGCCTTTTGGAAATATGTCTAAATCATTGTAACAGCTAAACAGATCTTTTGTCTTTTGTCAGTCAGTCTTTGTTTTTTTTTTTTTTTTTTTTTTTGAGTCTTGCTGTGTTGCCCAGGCTGGAGTGCAGTGGTGCGTTCTTGGCTCACTGCAACCTCTGCCTCTTGGGTTCAAGCGATTCTCCTGCCTAGCCTCCCAAGTAGCTGGGATTATAGGTGCCTGCCACCACACAGGGCTAGTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGTCCAGGCTGGTCTCAAACTCCTGACTTCAGGTGATCTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCTGGCTGTCAGTTTTTGATTCGGGACATTCTTTCTCTAGGACTGGGAATCATTGATTTGAACTATAGGTAGCAAAGAAGATAGAGCCGTATCTTACAGTTTCTTTAGGAGAGCAGGCATCTACCTTCAGGCCCCTGGCTCCAAGTTGCAAATGTACCTACCTGTCTTGAAGACATGAAGTTTATTTTTCCTTTAACTATATAGCCAAATAAAAACCACAGATGGCCTCCCAATTCCCAGGTGAATTTAGGATGAACTCTTATCTGACAAATGGTGCTGTCAGGTCTTCTATTGAGGACTAATTATGGTGACTTTTCATGAGTGAGTGTTTTTCCAATCTCTTAGCAGATTGCCTGTAATGTCCTTCACATTCTGGTCTCATTGTGTCATAGAACAGTTTTCTTTCGTTTCTACCATTGTGCATCATTTTTCTCATGATTCTGTTTTTAATTATATTTCCCAAACACTGAGAAATGTAAGGTGCCCACCAGGCCTCACTCTAGAGGGGATGTTCCCTCTAAGACTTCCTGTCACAACCCACATTTGTGCAGCAAAGTGCCTATTGCCCCGAAAATCTGCAGGCAGAATGGTCTTTCTGCTTGTTTGGAATCTTTAATCCCTTCTAGAAGAGTTTGGCCAGATTTCTACAAAAATAAGTTCACAGGGCATCAGTTAGCCATTCCAGCTCTGTCTTTCCATGCCCCTGGCATCTTCAGACCTGAAACCGATTCAGAGACCATGGGGGCTGGAAACCAACCAGGCACACACATGCATTGAGTAGGCCTGAGAATCTCAACATTCCCCTCATCCTCTTGCCCAAATGCCCATGAATGTGCAGAAGGTGCGTGCCACTTCTCTGCCCCTCCAGCACCTAAATCTGTAGCTCCAAATGTTGAACCCAGGTCCTGGGGTTCTCCAGGATGTGTGAGAGCAGAATTCCTGAGGGGCTGTCTCCTCTAGTTTTCTTCACAGCAACACCCAAGAATGCAGAGCCAGGTTGATTCCACCTGGAGTCTGCACATAAAGGCTGGTCTCCACCTGGGATCCACAAGACAGGGCCAGACTTTGGACTGAGGATGTATAGAAAATCCAGGGGACATTTTCTGCATTATGAGAGATTGACATAGACCTTGTAAAGCCCTACTTTTTGTGTGGGGTCTTTTAAGTTTTCCAGATCTTGTCCAGTGAGCTGCTGCAGTTCTGTGAGGGCCTTCTGGTCTAAGCAGAACATGGTGGCAGAATCTGTAAGTGTAAAGCAGCACCTTAGCAGAGGGAGGGCAGGGCCACAACTGTCCAGAGCCGTGAGTGAAGCTACACCTACCTGTGAGCTGTGTTACTGGAGTAGGGTAATCTTGTCCTTTCTTGTACCCAAGAGTTAGCTGATCAGGTATAGGTAATACTACACGTGGATCCAGAATCTGTGGCTCCACTGGGGCAGTTCCACTTTGTATCCTGGCCCCACAGAGTCAGCCTGAGTCTCTCCTGCCCAAATCACTACTGGGGCATCAGTACAGGATCACCAGGAACTCCCTCACCAGCACCTTGGAGTCCTTGGGACATTTGGTGATGTCCTGTGCAGACTGAGGTCAGGCTGACAACAGGGTCTAATTTCTTTCCATCTCAGAAGGAAAGGAATGCATCATCCAGGATTTGTTCCTCCACTCACAGAAGGAATCTCTTTATTTGGTATCCAAATGGGATTTGCTCCAGTTTTCTAATACGTGGACGAAGAACAAAGAGGAGTTCTGGAGACTCATACTGATAGGTAAACCAATTGCTTCCATTTCATATGGCCATTAGAAAAACATTTGTAGCAGCCATAGTCCCTACCATCTGGGAACTTTCAGTCTAGAGCAGATGGATAATGGCCAAATTCAGCATCATGTGATCCGGTGCAAGCACGGAGGTATACAGGGAACTTGGGCTTGATTTGGGACACTGTCCTTATTTGACCTTGTGAGTTCTGATGTCACAATCTGAAGGGCCACCCATGGACAGAAGAGTTGTTATTATTATTTCTATTGATTTTCTCTTGATTTGCTTTTTAATATAATTTTCCCAGAAGGCCCTACATGTTTTGATTAAATTGCTTGTTAATGGATTTACAAAATACTTAAGGATGAAACAAACAGTTAAAATCAGAAAAACTCTGGGAGTCAAGTTCTTGTGGTCAAAAATCAGAAAAACTCTGGGAGTCAAGTTCTTGTGGCCAGGCTTAGGAAAGACAGGACTTAAATCAGCAACATAGAGATGGGAAGCCTAGGGCCTGACCCGTGTCCCTAGCCTTGCTCTGCCCCAACCCTGCCCAAATGCACCCTCTTCTGAGCTTGGTTCAGGTCTGGCCCCACCTTGGAGCCTACCCTCACAGAACTGTTTGTTGGAGATCAGACTTCTGAGTGGTTGCTCTTGCTGGTTCTCCAGAGCTAGTGCTCACAATTTCCCCAAACCCAAAAGCAGTTAAATGGGAGCAAAGGACAATATGGGGGCCTGAATTTTTTTCTTCATTGAGAACAGTGTTTCTAGAGACATCCCACCTGGCAACCTTTTTCCATTCCTGCAGACCCAGTAGTTGCTTCACAAGTAGTAACAAAGTCAATGTAAAGACTACAGTGAGAAATCCTTAAGAACTAAACTTCACCCTTCTTTTCCGTATCTCTCCCATCTGTCTATAGTTAGCTTTTATAGTGACAGGGAAACAGAAGAAGAGAGAGAAAGGCTAGGCCATTATCTAAATCCTGCTGGGAATTATGGGATACTCAGGACCCACATCCCAGGGGTTTATATGGCTTAACTCACACCATGTGATGTTGCCAGCACAGTGCATACTGTGAGCACACAGTACAAGCTCAGTAAACACTGCTTTAATGCATGTATCCATGCTGTTTTCCAAATGCTGACTTAGATGTTACTGTCCTCTCCAGCCTCTGTAGACTTTAAATGGCTGGCAAAGGATGTGATTTTTCAGGACAGTGGTTGGTGGTCCTCGCTGTGAATGAAAAGTATTTGCGTTGTGATTAGAGTATTGGGTGTAAGGGACCCTGTGTTTTGTGCCCGCTTCCTCTAGCTGTGTGCTACTGATTATGGGTCTTAAGCCAATTCATGGAACTTTTCCAAACCTGCAGAATCACAGTACTTAGCACGGGCCCCAGAATACCAAATGATGTGTATGCATATTGAAGCTTGAGAGGGAATGCTTAGTTAAGTGATTCTCAGCTCAGGCTTCTAAGTAGAGTCACATGGCCAGTTTTAAGAAATATGGCCACCTGTATGTTCCTCCACATATTCTGTTTATTATTATACCCAGACTATGATTTACTTTTTTCCCCCACTAATATACAACGATTATGGGTCCATCAGTGCGTGAGCATTGATACCAATTCGTCTCATTACAGTCGATGCTAACTTCATTCACCTGGTTCAGGTGCTCTCTGCCAGATTCCTTCACTAGTTATTTTTCTCTTTGTTGTTAATGTGTTTCTAGGAGGGAGGATTTACTGAGTGATGCATGTAAACCATCATGTTTAATCCAGAGACTGCCATTTCTCTTTAGTTTCCCTTTGCTTGTGGGTTGCTTTGGAGAGTGAAGGCTCTCACATTTGTTGACCGTAAATACTGGTTTTTGAAACTGGAAATTCTGAAACAAGCCTCACTTCTGTAGGTTTCCATTTTAATTTGCTAATTTCACAAGCATACACTCCTTTATTCTCTGTATTTTCAGAGAAAGATAACAACAATTAACATATAATTAATATATCTACTGTCTTAAAATTCTAAAATATAACAGCACTTAGAATAAATAAAAACTTGGGGAAAAGAACTAGACTCAGAAACACAAGCTCTTATTTTAGTTTATGTCATTGAATGTGTTAGTCTTCATAGTTTGTTAAAAAACAGAAAAAGCCATCATCCATATAGTTTTAACACAATTTAAAATATTTCTTAATTAAGAAATGTTCTGTCACTTTTCATGTATGTATAGTTACCATTTCTATGTACGTATGTGCGTGTGACATAAGCATCATTTGATCAGTTTTGTGTTGCTGCCTTCCTGTTTTCATCTTCTTCTCAGTTGTGACACCTGCTCTGAACATTCTTTTTTACTTATCTCTGCATATTGGCCTGTATGTCCCTTTAAAATGAATTCTAAGTTAGATACTGGGGTAAAATAATAAATAAAAAAATAAATAAATATAAATAAATAATAAAATAAGCTCTACTATATACTAGATATTTGGCAAAAAATTTTTTTTCAGGCTTGAGACAGAGAGGGGAAGGGTCAGCAAAATATTTTTATTAAAGAGGAAGAATAGTATTATTTCTCATATAGATTTTTGTGGTTTTTATCAATACATGAAAAACTGCTAGGATGACATCTAGTAAATAGTAAGTGTTCAAAAAGGATTCTACTATTCTTGCTATTATGTTATAACCTGTAAATTTCATAAAACTCTCAATTCCACATCATCCCTGAATTCTTCGTTCAGTGTTCAACCTCTCTGCTATTCAAAAGTGTGGCCTCTGGACCTGAGGCATTGGTGTCACTGGTAAGCTTGTTAAAAATGCGGAAACGCAGCCCCAGCCCCAGCCCCAGATCTCCTGAATCAGAATCTGCATTTGAACCAGTTCTGCAGTTTATTGCTGAACACAATAAAATTTCAGAAGTATGCCTCTAAGTCACCATGACTTTTCCACCTGAGAATTATATACAACTGATTGTGGATGATGTAAATATAGACTAAAAAATGTATACTCCTATGTTGATGCGTTAGTTTTTTGTTTTTTGTTTTTTTGTTTTTGTTTTTTGAGACGGAATTTCGCTCTTGTTGCTCAGGCTGGAGTTCAGTGGTGCAATCTTGGCTCACTGCAACCTCCACTTCCTGGTTCAAGTGATTCTCCTGCCTCAGGTTCCTGAGTAGCTGGGATTACAGGCATGTGCCACCACGCCCAGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCATCATGTTGGCCAGGCTAGTCTCGAACTTAGGTGATCCACCCATCTCGGCATCCCAAAGTGCTGAGATTACAGGTATGAGCTACCGCGCCCGGCCTCGATGCCTTAGTTTTATACTTTATATTCCATATAGGCATAGTATCTACACTGGTTTTGTGGATTTTGTATCATTCTCTTTCCACAGAGTTAGAGAATACATAGAAAATATTATTGTGTTTAAAAGTATCTTATTGAATATTTCAGGTCACTCATATAAATCAGTCAGTTTTCTTAGCTCTCTTATTTCATCTTGGTTTGTCAAGTGATGAACTCTGCCCATGGCCACATGGTCAATGTGCTATTTATTTTTATTTCAG
Seq C2 exon
GGACTGTTGACATTCAGGGATGTGGCCATAGAATTCTCTCGGGAGGAGTGGGAACACCTGGACTCAGATCAGAAGCTTTTATATGGGGATGTGATGTTAGAGAACTACGGAAACCTGGTCTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197302-ZNF720:NM_001130913:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)