HsaALTA1054099-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000197540 | GZMM
Description
granzyme M [Source:HGNC Symbol;Acc:HGNC:4712]
Coordinates
chr19:544034-547436:+
Coord C1 exon
chr19:544034-544126
Coord A exon
chr19:547280-547283
Coord C2 exon
chr19:547284-547436
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
TTTGTCCCCCATCCTGGCAGGCA
3' ss Score
8.97
Exon sequences
Seq C1 exon
GGCCGGGGCCAGCACCCACACTGGGTCTCCACAGCGGCATGGAGGCCTGCGTGTCTTCACTGCTGGTGCTGGCCCTGGGGGCCCTGTCAGTAG
Seq A exon
GCAG
Seq C2 exon
CTCCTTTGGGACCCAGATCATCGGGGGCCGGGAGGTGATCCCCCACTCGCGCCCGTACATGGCCTCACTGCAGAGAAATGGCTCCCACCTGTGCGGGGGTGTCCTGGTGCACCCAAAGTGGGTGCTGACGGCTGCCCACTGCCTGGCCCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197540-0-3,0-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(14.8=96.9)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGGGCCCTGTCAGTAG
R:
TCTCTGCAGTGAGGCCATGTA
Band lengths:
95-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains