RnoALTA0017580-2/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000030530 | Gzmm
Description
granzyme M [Source:RGD Symbol;Acc:620022]
Coordinates
chr7:12895432-12899004:-
Coord C1 exon
chr7:12898911-12899004
Coord A exon
chr7:12895512-12895588
Coord C2 exon
chr7:12895432-12895511
Length
77 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCTCCCTCCCTTCTCAGTAGGCA
3' ss Score
7.91
Exon sequences
Seq C1 exon
GGGGCCCCTTCCCCCAGGGACCACCAGTCCTGTGCCAGGATGGAGGTCCGCTGGTCCCTGCTGCTCCTGCTGGCCCTGAAAACACTGTGGGCAG
Seq A exon
GCAACAGATTTGAGGCCCAGATCATTGGGGGTCGAGAGGCAGTCCCGCACTCCCGCCCATACATGGTCTCGCTACAG
Seq C2 exon
AATACCAAGTCCCACGTGTGTGGGGGAGTCCTCGTGCATCAGAAGTGGGTGTTGACCGCTGCCCACTGCCTGTCTGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030530-1-3,1-2,1-1-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(20.0=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAGGGACCACCAGTC
R:
GTTCAGACAGGCAGTGGGC
Band lengths:
162-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]