MmuALTA0008339-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000054206 | Gzmm
Description
granzyme M (lymphocyte met-ase 1) [Source:MGI Symbol;Acc:MGI:99549]
Coordinates
chr10:79689020-79692980:+
Coord C1 exon
chr10:79689020-79689465
Coord A exon
NA
Coord C2 exon
chr10:79692824-79692980
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CACCCCCTTCTTTTCAGCAGGCA
3' ss Score
7.23
Exon sequences
Seq C1 exon
ATTTGCAGCCAGCCTTATGTACAAAGTTGCAGGGCCAGCAGTAAGGCTCAGTGGGTAGAGGCCTGCCACCAAGCCTAGCACAGGACCTACACGGCTCAAGGAGAGAACTGACCCTGTGAGTCATCCTCTGTGGGGGTTGAGGTCCATTGAGACAGACCCAGTGTTTACCTGGTGCTAATCACCAGAATGAGCATCACTGGGCTATAGTTGCTGCCCCCCAGGCAGGGGGCAGCTTTGACAGCAGAATTGCTTTCTAAAACCACACAGCAGGGTGTGAAGTAGGAGGAGTTGACACTTGTGCAAGGTGGGTGGTACTGGGAAGGCCACCTGTCCCCACAGGAAGAGAGAGTGGGGAACCCTTTCCCCCAGGGACCACTGATCCTGTGCCAGGATGGAGGTCTGCTGGTCCCTGCTGCTACTGCTGGCCCTGAAAACACTGTGGGCAG
Seq A exon
NA
Seq C2 exon
GCAACAGATTTGAGACCCAGATCATTGGGGGTCGAGAGGCAGTCCCGCACTCCCGCCCATACATGGCCTCTCTACAGAAAGCCAAGTCCCATGTGTGTGGGGGAGTCCTTGTGCATCGGAAGTGGGTATTGACAGCTGCCCACTGCCTGTCTGAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054206-1-1,1-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(20.0=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGGAGGTCTGCTGGTC
R:
CCTCTCGACCCCCAATGATCT
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types