HsaALTA1054786-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000198315 | ZKSCAN8
Description
zinc finger with KRAB and SCAN domains 8 [Source:HGNC Symbol;Acc:HGNC:12983]
Coordinates
chr6:28141910-28148485:+
Coord C1 exon
chr6:28141910-28142029
Coord A exon
chr6:28148316-28148318
Coord C2 exon
chr6:28148319-28148485
Length
3 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
ATCATATTTTCTTCATGAAGAAG
3' ss Score
2.39
Exon sequences
Seq C1 exon
GTGGCCGGAGGGGCCTGGTCCGAGTACAGCTTTCATCGCCTTTACTCCCCGACCTTCCTTCGAGTCTGTTTATCCGTTGCAGCCTCCCTTCCCCACGACGGGGCGCCTCTGCAACTCACA
Seq A exon
AAG
Seq C2 exon
TACCCTTAGAAAGAGGCCCTCAGAAGAGTCTTCTCTTAAGAAGATAAAGAAGGTAGTGGAAACGAACTTCCTGAGCTTTTCAGGCTCTAATGGCTGAAGAATCAAGAAAGCCTTCAGCCCCATCCCCACCAGACCAGACTCCTGAAGAGGATCTTGTAATCGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198315-0-4,0-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.265
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=67.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTACTCCCCGACCTTCCT
R:
TGAGGGCCTCTTTCTAAGGGT
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains