MmuALTA0020518-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000063894 | Zkscan8
Description
zinc finger with KRAB and SCAN domains 8 [Source:MGI Symbol;Acc:MGI:1913815]
Coordinates
chr13:21526519-21531120:-
Coord C1 exon
chr13:21530945-21531120
Coord A exon
chr13:21527019-21527021
Coord C2 exon
chr13:21526519-21527018
Length
3 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
ATCATTTTCTGTTCTGGAAGAAG
3' ss Score
1.28
Exon sequences
Seq C1 exon
GCTTCCGGAAGTGGCTGTGGGGCAAGATGCGTGCTGCCCGGCTCTGCGGCTCCAAGGGTTTGGAACTTAGCGGCTGCAGGGGTCCCGCTCGGGTTCGGTGTCCGTCGCGTCTCCTCGCGCGCTTCCCTGTCCGCGCTGTGCCGCCTCCCGCCCTCGGGCAGCGTGGGGAGCTCTCG
Seq A exon
AAG
Seq C2 exon
TGCCCTGGAGGTTCTTGGAAGACTTGTAAGAAGATACAGAAGGTAGAGGAAAGAGATCTTCTGAGCTTTACTGGCCCTAAATGGCTACAGAACCAAGAAAGCCTTCTTCAGCCCCATCTCCACCAGACCAGGCTCCTGAAGAGGATCTTGTCATTGTCAAGATAGAGGAGGATCATGGTTGGGATGAGGAATCCGGTGTGCATGAGAACAACACACCTGGCCAAGAACTGTTTCGTCTACGCTTCAGACAGCTCTGCTACCAGGAGACATTAGGACCTCGGGAAGCTCTGATCCAGCTCCGTGCATTTTGCCATCAGTGGCTGCGGCCAGACTTGAACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCAGGGGAGCTGCAGGCTCTGGTTAAGGAGCACCAGTTACAGAATGGAGAGGAGGTGGTAACCCTATTGGAGGACCTGGAAAGGCAAATTAATGTCCTAGGGCGGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063894-0-2,0-1,0-0-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.307
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=67.1)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCGTCGCGTCTCCTC
R:
TCTTCCAAGAACCTCCAGGGC
Band lengths:
100-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types