HsaALTA1056174-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000204859 | ZBTB48
Description
zinc finger and BTB domain containing 48 [Source:HGNC Symbol;Acc:HGNC:4930]
Coordinates
chr1:6588060-6588442:+
Coord C1 exon
chr1:6588060-6588196
Coord A exon
chr1:6588278-6588281
Coord C2 exon
chr1:6588282-6588442
Length
4 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CTCTTGCCTTGTGCCTGCAGCCA
3' ss Score
9.12
Exon sequences
Seq C1 exon
GAATGAGAGGCCACACGTATGTGAGTTCTGCAGCCACGCCTTCACCCAAAAGGCCAATCTCAACATGCACCTGCGCACACACACGGGTGAGAAGCCCTTCCAGTGCCACCTCTGTGGCAAGACCTTCCGAACCCAAG
Seq A exon
CCAG
Seq C2 exon
CCTGGACAAGCACAACCGCACCCACACCGGGGAAAGGCCCTTCAGTTGCGAGTTCTGTGAACAGCGCTTCACTGAGAAGGGGCCCCTCCTGAGGCACGTGGCCAGCCGCCATCAGGAGGGCCGGCCCCACTTCTGCCAGATATGCGGCAAGACCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204859-16-19,16-18-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.299 A=NA C2=0.483
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(59.3=34.0),PF134651=zf-H2C2_2=WD(100=55.3)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=46.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTCTGTGGCAAGACCTTC
R:
TCTCAGTGAAGCGCTGTTCAC
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains