HsaALTA1056344-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000205517 | RGL3
Description
ral guanine nucleotide dissociation stimulator like 3 [Source:HGNC Symbol;Acc:HGNC:30282]
Coordinates
chr19:11418671-11419273:-
Coord C1 exon
chr19:11419246-11419273
Coord A exon
NA
Coord C2 exon
chr19:11418671-11418784
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
GAGTCCGCCTGTGCGTCCAGGCA
3' ss Score
3.78
Exon sequences
Seq C1 exon
GCGCACAGCAGGCAAAGAGCTGGCCCTG
Seq A exon
NA
Seq C2 exon
GCACCGCTGCAGGACTGGGGTGAAGAGACCGAGGACGGCGCGGTGTACAGTGTCTCCCTGCGGCGGCAGCGCAGTCAGCGCAGGAGCCCGGCGGAGGGCCCCGGGGGCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205517-0-2,0-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.682
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCAGGCAAAGAGCTGG
R:
CGCAGGGAGACACTGTACAC
Band lengths:
87-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains