MmuALTA1031663-2/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000040146 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:MGI Symbol;Acc:MGI:1918996]
Coordinates
chr9:21988849-21989434:-
Coord C1 exon
chr9:21989365-21989434
Coord A exon
chr9:21988948-21988959
Coord C2 exon
chr9:21988849-21988947
Length
12 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
GAGCCCGCCTCCACATCCAGGCG
3' ss Score
5.14
Exon sequences
Seq C1 exon
CTCAGCGGCGCCAGGGAGCAGGACGGGCACCGGGGCCATGGAGAGGACAGCGGGCAAAGAGCTGGCCCTG
Seq A exon
GCGCCGCTGCAG
Seq C2 exon
GACTGGGGCGAGGAGACCGAGGATGGCGCCGTGTACAGCGTCTCCCTGCGGCGGCAGCGCAGCCAGCGCTCGACCCCAGAGAGGTCTGGAGAAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040146-0-3,0-2,0-1,0-0-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=NA C2=0.838
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAAGAGCTGGCCCTG
R:
CAGACCTCTCTGGGGTCGAG
Band lengths:
106-118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types