RnoALTA0033693-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000013027 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:RGD Symbol;Acc:1309756]
Coordinates
chr8:22999879-23000455:-
Coord C1 exon
chr8:23000396-23000455
Coord A exon
chr8:22999978-22999989
Coord C2 exon
chr8:22999879-22999977
Length
12 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
GAGCCCGCCTCCACGTCCAGGCA
3' ss Score
4.21
Exon sequences
Seq C1 exon
CCAGGGAGCAGGACGGGCACCGGGGCCATGGAGAGGACAGCGGGCAAAGAGTTGGCCCTG
Seq A exon
GCACCACTACAG
Seq C2 exon
GACTGGGGAGAGGAGACCGAGGATGGCGCCGTGTACAGCGTCTCCCTGCGGCGGCAGCGCAGCCAGCGCTCAACCCCAGAGGGGTCTGGAGACGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013027-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=NA C2=0.873
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCGGGCAAAGAGTTGG
R:
CTCTGGGGTTGAGCGCTG
Band lengths:
106-118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]