RnoINT0126475 @ rn6
Intron Retention
Gene
ENSRNOG00000013027 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:RGD Symbol;Acc:1309756]
Coordinates
chr8:22999879-23000485:-
Coord C1 exon
chr8:23000396-23000485
Coord A exon
chr8:22999990-23000395
Coord C2 exon
chr8:22999879-22999989
Length
406 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
GAGCCCGCCTCCACGTCCAGGCA
3' ss Score
4.21
Exon sequences
Seq C1 exon
CCGCCGGCCCTTCCGCTTCACTCAGCGGCGCCAGGGAGCAGGACGGGCACCGGGGCCATGGAGAGGACAGCGGGCAAAGAGTTGGCCCTG
Seq A exon
GTAAGAGGGAGCTGGGGATCCTCAGATCCCACGTCCCTAGCGTAACCCCAGATTCAGAAACTCCAGGCATCCACCCCTCGTTTTCTAACCTTTCTCCAAAATGGATGTGCCCTGGAGTCCTCATTTGGGGATTCAGAGTTCCTGACTCCGTGAAGCGGCTAGTTTGGGGGATGGGGACGGGGGTCTGAGAAGTCTCAGGAGGAGGCGACAGAAAGATTCTTTGTGACATTGGACTCTGGGGTGTCCCCAAATGATACTCCATCTGGGAGAAGGGTACCCGTGGCGAAGAGGGACCCACCTGGGAGCCCACCCCGAGTCTCGCCTACTATGTTCGGGAAAGCGGGCCAAACATAAAGTCAGGGGGCTAAGGCCGGTGGGACGTCCCTGAGCCCGCCTCCACGTCCAG
Seq C2 exon
GCACCACTACAGGACTGGGGAGAGGAGACCGAGGATGGCGCCGTGTACAGCGTCTCCCTGCGGCGGCAGCGCAGCCAGCGCTCAACCCCAGAGGGGTCTGGAGACGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013027:ENSRNOT00000017493:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=NA C2=0.873
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTCCGCTTCACTCAGC
R:
CCGTCTCCAGACCCCTCTG
Band lengths:
190-596
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]