HsaINT0139881 @ hg19
Intron Retention
Gene
ENSG00000205517 | RGL3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:HGNC Symbol;Acc:30282]
Coordinates
chr19:11529347-11530018:-
Coord C1 exon
chr19:11529922-11530018
Coord A exon
chr19:11529461-11529921
Coord C2 exon
chr19:11529347-11529460
Length
461 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
GAGTCCGCCTGTGCGTCCAGGCA
3' ss Score
3.78
Exon sequences
Seq C1 exon
ACCCGCCACCCGCCGGCCCTTCCGCCTCACTCAGCGGCGCCACTGAGAGGGACGGGCGCCGGCCATGGAGCGCACAGCAGGCAAAGAGCTGGCCCTG
Seq A exon
GTAAGGGGACAAGGGATCCCCGGACCCCGCATCCCTGGTGACCCGCAGGTCCAGAAACTCCAAGCGCCCGCCCGTCGGACGGTATCTGCTCCCAATCTGAACTTGCCCTGGAGTCCCCTCCTGGGGACTCGCGGCCCTTGACCCAGTGAAGCGACTGGTTCCTCTTAGGGATGGGGGCGCGAGTCTCTGAGCGCAGTCGGCAGAAAGAGCTAGAGACAGGTTCTATTAGACTGGGCCCTGGGACATCCCCAAATGCCACCCCATGTCCTCAGGACCTGGGAGGAGGGGACCCGCAGCGAGGAGGGGACTAGCCTGGGACCCCAGCCCTAGTCTCGCAGCTTCTGGCCGGGAAGGGGCGTGGGGATGCAGCAGGAGGACTCGGCCCGAGTCCGAGCGGCCAAGGAGGCTGAGGCCCCAGGACCTGTGCCCCTTTGGTGCCCTGAGTCCGCCTGTGCGTCCAG
Seq C2 exon
GCACCGCTGCAGGACTGGGGTGAAGAGACCGAGGACGGCGCGGTGTACAGTGTCTCCCTGCGGCGGCAGCGCAGTCAGCGCAGGAGCCCGGCGGAGGGCCCCGGGGGCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205517-RGL3:NM_001161616:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.684
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)