HsaALTA1056648-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000213079 | SCAF8
Description
SR-related CTD associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr6:154805369-154808201:+
Coord C1 exon
chr6:154805369-154805486
Coord A exon
chr6:154808070-154808081
Coord C2 exon
chr6:154808082-154808201
Length
12 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTAT
5' ss Score
4.64
3' ss Seq
TTTGTATATGTTCTCAATAGGCC
3' ss Score
8.39
Exon sequences
Seq C1 exon
TTCTCACGTTTCAGAATCTGTGAACAATTCCATTTTTCATCAGATAGCAGAACAACTACAACAGCAAAACCTAGAACATCTCAGACAGCAGCTCTTGGAGCAGCAACAGCCTCAAAAG
Seq A exon
GCCACTCCTCAG
Seq C2 exon
GATAGTCAGGAAGGAACCTTTGGGTCAGAGCATTCAGCGTCACCATCACAAGGGAGTAGTCAGCAGCATTTTCTTGAACCTGAAGTCAATTTGGATGATTCCATAGATATTCAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213079-32-38,32-37-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAGACAGCAGCTCTTGGA
R:
TGCTGCTGACTACTCCCTTGT
Band lengths:
108-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains