HsaALTA1058000-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000228315 | GUSBP11
Description
glucuronidase, beta pseudogene 11 [Source:HGNC Symbol;Acc:HGNC:42325]
Coordinates
chr22:23640308-23652576:-
Coord C1 exon
chr22:23652479-23652576
Coord A exon
chr22:23640331-23640423
Coord C2 exon
chr22:23640308-23640330
Length
93 bp
Sequences
Splice sites
5' ss Seq
GGTGTGAGT
5' ss Score
6.05
3' ss Seq
GTGCCCCTCACACCCAGCAGGTT
3' ss Score
5.1
Exon sequences
Seq C1 exon
GTGGTCACGGACCTCAGGTTGTGGATGTGGCAGACCTGCTTCACGCTCTCGGGCCTCCTCTGGGAGCTCATCAGGACTATGGGGGATTGGGCAGAGGT
Seq A exon
GTTCCTGCTCCAGCGTGGCTCCTGGACTGGCGCCAGATGCTGGCCCTGGGGGTTTCAATCCAAGCATAATTCAGTGAAGCATGTGTTTGGCAG
Seq C2 exon
TGGGACCCAGCTCACTGTTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000228315-20-38,20-37,20-36-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCTCAGGTTGTGGATGTG
R:
AAAACAGTGAGCTGGGTCCCA
Band lengths:
111-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains