HsaALTD1045310-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000228315 | GUSBP11
Description
glucuronidase, beta pseudogene 11 [Source:HGNC Symbol;Acc:HGNC:42325]
Coordinates
chr22:23638487-23690356:-
Coord C1 exon
chr22:23690236-23690356
Coord A exon
NA
Coord C2 exon
chr22:23638487-23638942
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGCAGGT
5' ss Score
2.53
3' ss Seq
CCCCTCCTCTGTCCACACAGGTC
3' ss Score
11.68
Exon sequences
Seq C1 exon
TCTGGAGAAACAGCTACGGCCATCCCAGCCCTGGCCAAGGGGAAAATGCCGGAAGACTCCAGGGTGGGAGGAAGCGCGTCCCAAGGCCCAGGATCTGCGAGGCGACTTGGGGAAAACGCAG
Seq A exon
NA
Seq C2 exon
GTCAGCCCAAGACTACCCCGTCGGTCATTCTGTTCCTGCCGTCCTGTGAGGAGCCCCAAGCCAACAAGGCCACACTGGTGTGTCTCATGAATAACTTTATCCGGGAATCTTGATGGTGACCTGGAAGGCAGATGGTACCCTCATCACCCAGAGCGTGGAGAAGACCACGCCCTCCAAACAGAGCAACAACAAGTACGTGGCCAGCAGCTACCTGAGCCTGACGCCCGAGCAGTGGAGGTCCCGCAGAAGCTACAGCTGCCAGGTTATGCAAGAAGGGAGCACCGTGGAGAAGTCAGTGGCCCCTGCAGAATGTTCATAGGTTCCAGCCCCCACCCCACCCACAGGGGCCTGGAGCTGCAGGATCCCAGGGGAGGGGTCTCTCTCTGCATCCCAAGCCATTCAGCCCTTCTCGCTGTACCCAGTAAACCCTCAATAAATATCTTTGTCAGCCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000228315-10-39,11-39-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGGGAAAATGCCGGAAGAC
R:
GACGGGGTAGTCTTGGGCT
Band lengths:
107-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains