HsaEX7109084 @ hg38
Exon Skipping
Gene
ENSG00000228315 | GUSBP11
Description
glucuronidase, beta pseudogene 11 [Source:HGNC Symbol;Acc:HGNC:42325]
Coordinates
chr22:23683725-23693151:-
Coord C1 exon
chr22:23690236-23693151
Coord A exon
chr22:23686831-23686995
Coord C2 exon
chr22:23683725-23683867
Length
165 bp
Sequences
Splice sites
3' ss Seq
GTTTCCCTTTTTAATCACAGAAA
3' ss Score
6.88
5' ss Seq
AAGGCAAGA
5' ss Score
2.81
Exon sequences
Seq C1 exon
ACCATGGACCACCAGAGGATCGGGATCTGGAACTCACACCAAGAAGCACCAACCCTTCAGGGACTTGTGCATATGGAGAACCTGGGTGCCCATGGTGAAAAGCGTTCTAGGCTTTCAAAGTAACATTGCATGTGAGGATGGAGAATGATAAAACGATTCCTGCCTTCAAGGCATCGTCCCGGTGTTTGTCAGCTGTGGGGCAACAGCACCCTCTGTGTCAGCAACCTGCATGAAGAGCATCATCCCTGCAAGTCCTCAAGGCCTGGGGAGGCCTCATCCCCTCCTCATTTCAGCAACAGCACACAGGACAATACGCTCTAGAAGAACTCTTTGACTTAAAGGTATATGATTGTTTTTGTTCCTTTAACATGAACGTGAGTCTGGAGAAACAGCTACGGCCATCCCAGCCCTGGCCAAGGGGAAAATGCCGGAAGACTCCAGGGTGGGAGGAAGCGCGTCCCAAGGCCCAGGATCTGCGAGGCGACTTGGGGAAAACGCAG
Seq A exon
AAAATAAAGCATGCGAAGAAGTTAACTTGGTGCCATTGGGCAGAGGGTGAGAGCCCAGCAAACCGGAGAGATCAGCTGCCCACATCAGTGGCGAGGAGTGCGGAGAGTGGGTGAGGCTGGGGCAGGAAGCAGGCCAGCCTGCCAGAGCCCAGGAACAGGTGAAAG
Seq C2 exon
GACCTGCTGAAGCTCACACCCGTGGACCACCCAGACTGCCTGCCGCTACAGGATGCCCTCCGCATCTCCCAGGACTTCTTTCCGGCATCAGTGTGGACATTGACCCCACTGGACTGCAGTCACAGTGGACTCCCAAGGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000228315-'10-24,'10-22,14-24=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGGAGAAACAGCTACGGC
R:
GAGTCCACTGTGACTGCAGTC
Band lengths:
254-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains