HsaEX7109085 @ hg38
Exon Skipping
Gene
ENSG00000228315 | GUSBP11
Description
glucuronidase, beta pseudogene 11 [Source:HGNC Symbol;Acc:HGNC:42325]
Coordinates
chr22:23652479-23693151:-
Coord C1 exon
chr22:23690236-23693151
Coord A exon
chr22:23683725-23683867
Coord C2 exon
chr22:23652479-23652576
Length
143 bp
Sequences
Splice sites
3' ss Seq
ACCACCTCATCCCTTCCCAGGAC
3' ss Score
9.48
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ACCATGGACCACCAGAGGATCGGGATCTGGAACTCACACCAAGAAGCACCAACCCTTCAGGGACTTGTGCATATGGAGAACCTGGGTGCCCATGGTGAAAAGCGTTCTAGGCTTTCAAAGTAACATTGCATGTGAGGATGGAGAATGATAAAACGATTCCTGCCTTCAAGGCATCGTCCCGGTGTTTGTCAGCTGTGGGGCAACAGCACCCTCTGTGTCAGCAACCTGCATGAAGAGCATCATCCCTGCAAGTCCTCAAGGCCTGGGGAGGCCTCATCCCCTCCTCATTTCAGCAACAGCACACAGGACAATACGCTCTAGAAGAACTCTTTGACTTAAAGGTATATGATTGTTTTTGTTCCTTTAACATGAACGTGAGTCTGGAGAAACAGCTACGGCCATCCCAGCCCTGGCCAAGGGGAAAATGCCGGAAGACTCCAGGGTGGGAGGAAGCGCGTCCCAAGGCCCAGGATCTGCGAGGCGACTTGGGGAAAACGCAG
Seq A exon
GACCTGCTGAAGCTCACACCCGTGGACCACCCAGACTGCCTGCCGCTACAGGATGCCCTCCGCATCTCCCAGGACTTCTTTCCGGCATCAGTGTGGACATTGACCCCACTGGACTGCAGTCACAGTGGACTCCCAAGGGGCAG
Seq C2 exon
GTGGTCACGGACCTCAGGTTGTGGATGTGGCAGACCTGCTTCACGCTCTCGGGCCTCCTCTGGGAGCTCATCAGGACTATGGGGGATTGGGCAGAGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000228315-'10-29,'10-24,15-29=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAACAGCACACAGGACAAT
R:
CTGCCACATCCACAACCTGAG
Band lengths:
242-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains