BtaEX6085744 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008424 | ABR
Description
Bos taurus active BCR-related gene (ABR), mRNA. [Source:RefSeq mRNA;Acc:NM_001046204]
Coordinates
chr19:22379074-22382101:+
Coord C1 exon
chr19:22379074-22379126
Coord A exon
chr19:22379697-22379837
Coord C2 exon
chr19:22381980-22382101
Length
141 bp
Sequences
Splice sites
3' ss Seq
CACCACCCCATCCTTCCCAGGAC
3' ss Score
7.05
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
CTCTGCTCTACAAGCCCATTGACCGAGTCACCAGGAGCACCCTGGTCCTACAC
Seq A exon
GACCTGCTGAAGCACACACCTGTGGACCACCCAGACTACCCGCTGCTACAGGATGCCCTCCGCATCTCCCAGAACTTCCTGTCCAGCATCAACGAGGACATCGACCCCCGCCGGACTGCAGTCACAACCCCCAAGGGGGAG
Seq C2 exon
ACGCGGCAACTGGTGAAGGACGGCTTCCTAGTGGAAGTGTCAGAGGGCTCCCGGAAACTGCGGCACGTCTTCCTCTTCACCGACGTCCTCCTGTGCGCCAAGCTAAAGAAGACATCAGCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008424-'34-14,'34-12,35-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.191 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(31.5=100)
A:
PF0062115=RhoGEF=PD(16.4=66.0)
C2:
PF0062022=RhoGAP=PU(1.6=7.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTACAAGCCCATTGACCG
R:
CCCGCTGATGTCTTCTTTAGCT
Band lengths:
171-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]