HsaEX6019756 @ hg19
Exon Skipping
Gene
ENSG00000159842 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:81]
Coordinates
chr17:973209-976917:-
Coord C1 exon
chr17:976865-976917
Coord A exon
chr17:975854-975994
Coord C2 exon
chr17:973209-973330
Length
141 bp
Sequences
Splice sites
3' ss Seq
CACCGCCTCACCCTTCCCAGGAC
3' ss Score
8.28
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
CTCTGCTCTACAAGCCCATTGACCGGGTCACTCGGAGCACCCTAGTCCTACAC
Seq A exon
GACCTGCTGAAGCACACACCTGTGGACCACCCCGACTACCCGCTGCTGCAGGATGCCCTCCGCATCTCCCAGAACTTCCTGTCCAGCATCAACGAGGACATCGACCCCCGCCGGACTGCAGTGACAACGCCCAAGGGGGAG
Seq C2 exon
ACGCGACAGCTGGTGAAGGACGGCTTCCTGGTGGAAGTGTCAGAGAGCTCCCGGAAGCTGCGGCACGTCTTCCTCTTTACAGATGTCCTACTGTGTGCCAAGCTGAAGAAGACCTCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159842-'14-13,'14-11,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.213 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(10.4=100),PF104224=LRS4=PD(10.6=83.3)
A:
PF0062115=RhoGEF=PD(16.4=66.0)
C2:
PF0016924=PH=PU(23.4=90.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTACAAGCCCATTGACCGG
R:
CCTGCAGAGGTCTTCTTCAGC
Band lengths:
170-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)