DreEX6014036 @ danRer10
Exon Skipping
Gene
ENSDARG00000059587 | ABR (1 of 2)
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr5:61857080-61860967:+
Coord C1 exon
chr5:61857080-61857132
Coord A exon
chr5:61858931-61859071
Coord C2 exon
chr5:61860846-61860967
Length
141 bp
Sequences
Splice sites
3' ss Seq
CTGTATGTTGTCTGTTTCAGGAC
3' ss Score
12.98
5' ss Seq
GAGGTGCGA
5' ss Score
5.51
Exon sequences
Seq C1 exon
CTCTCCTCTACAAACCTATTGACCGGGTTACTCGAAGCACTCTAGTCCTGCAT
Seq A exon
GACCTGTTGAAGCACACTCCTAAGGATCATCCCGATTTCCCCTTACTGCAGGACGCTCTGAGAATATCCCAGAACTTCCTGTCCAGCATCAATGAAGAGATCGACCCACGCAGGACTGCCGTGACCACACCAAAGGGAGAG
Seq C2 exon
GCTCGTCAGCTGGTGAAGGACGGCTTCCTGGTGGAGGTGTCGGAGGGAACGCGTAAACTCCGTCATGTCTTCCTCTTCACAGACCTTCTGCTCTGCGCCAAGATGAAAAAGACCGCAGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059587-'11-10,'11-9,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.213 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(9.0=100)
A:
PF0062115=RhoGEF=PD(16.4=66.0)
C2:
PF0016924=PH=PU(23.3=90.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTACAAACCTATTGACCGGG
R:
CCAACTGCGGTCTTTTTCATCT
Band lengths:
171-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]