MmuEX7026249 @ mm10
Exon Skipping
Gene
ENSMUSG00000017631 | Abr
Description
active BCR-related gene [Source:MGI Symbol;Acc:MGI:107771]
Coordinates
chr11:76461293-76464290:-
Coord C1 exon
chr11:76464238-76464290
Coord A exon
chr11:76463528-76463668
Coord C2 exon
chr11:76461293-76461414
Length
141 bp
Sequences
Splice sites
3' ss Seq
CCACCCCCATCTTTCCTCAGGAT
3' ss Score
10.39
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
CTCTGCTGTACAAGCCAATTGACCGAGTCACCCGGAGCACCCTGGTCCTTCAC
Seq A exon
GATCTGTTGAAGCACACACCCGTGGACCACCCGGACTACCCGCTGCTTCAGGATGCTCTCCGCATCTCCCAGAATTTCCTGTCTAGCATTAACGAGGACATTGATCCTCGCCGGACTGCAGTCACAACCCCCAAGGGAGAG
Seq C2 exon
ACTCGGCAGCTGGTGAAGGACGGCTTCCTGGTGGAAATGTCTGAGAGCTCCCGGAAGCTGCGGCATGTCTTTCTCTTCACAGATGTTCTGCTGTGTGCCAAGCTAAAGAAGACCTCAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017631-'40-36,'40-35,41-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.212 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(31.5=100)
A:
PF0062115=RhoGEF=PD(57.4=66.0)
C2:
PF0016924=PH=PU(23.4=90.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTACAAGCCAATTGACCGAGT
R:
CCTGCTGAGGTCTTCTTTAGCT
Band lengths:
170-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types