RnoEX6048621 @ rn6
Exon Skipping
Gene
ENSRNOG00000056837 | Abr
Description
ABR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1306279]
Coordinates
chr10:64609295-64612545:-
Coord C1 exon
chr10:64612493-64612545
Coord A exon
chr10:64611820-64611960
Coord C2 exon
chr10:64609295-64609416
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTGCCCCCACTGTTTCCCAGGAT
3' ss Score
7.48
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
CTCTGCTGTATAAGCCTATTGACCGAGTCACTCGGAGTACCCTGGTCCTGCAC
Seq A exon
GATCTGTTGAAGCACACACCTGTGGACCACCCCGACTACCCACTGCTTCAGGATGCCCTTCGAATCTCCCAGAATTTTCTATCTAGCATTAATGAGGATATTGATCCTCGCCGGACTGCAGTCACAACCCCCAAGGGGGAG
Seq C2 exon
ACTCGGCAGCTGGTGAAGGACGGCTTCCTGGTGGAAATGTCTGAGAGCTCCCGGAAGCTGCGGCACGTCTTTCTCTTCACAGATGTTCTACTGTGTGCCAAGCTAAAGAAGACCTCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056837-'27-17,'27-15,28-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.213 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(9.0=100)
A:
PF0062115=RhoGEF=PD(16.4=66.0)
C2:
PF0016924=PH=PU(23.4=90.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTATAAGCCTATTGACCGAGTCAC
R:
CCTGCAGAGGTCTTCTTTAGCT
Band lengths:
170-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]