HsaEX6019756 @ hg38
Exon Skipping
Gene
ENSG00000159842 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr17:1067077-1073677:-
Coord C1 exon
chr17:1073625-1073677
Coord A exon
chr17:1072614-1072754
Coord C2 exon
chr17:1067077-1067242
Length
141 bp
Sequences
Splice sites
3' ss Seq
CACCGCCTCACCCTTCCCAGGAC
3' ss Score
8.28
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
CTCTGCTCTACAAGCCCATTGACCGGGTCACTCGGAGCACCCTAGTCCTACAC
Seq A exon
GACCTGCTGAAGCACACACCTGTGGACCACCCCGACTACCCGCTGCTGCAGGATGCCCTCCGCATCTCCCAGAACTTCCTGTCCAGCATCAACGAGGACATCGACCCCCGCCGGACTGCAGTGACAACGCCCAAGGGGGAG
Seq C2 exon
GAAGCACCAGCAGTATGACTGTAAGTGGTACATCCCCCTGGCCGACCTGGTGTTTCCATCCCCCGAGGAGTCTGAGGCCAGCCCCCAGGTGCACCCCTTCCCAGACCATGAGCTGGAGGACATGAAGATGAAGATCTCTGCCCTCAAGAGTGAAATCCAGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159842_MULTIEX1-4/21=3-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.212 C2=0.207
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(31.5=100)
A:
PF0062115=RhoGEF=PD(16.4=66.0)
C2:
PF0016924=PH=PU(45.5=98.2)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTACAAGCCCATTGACCG
R:
TCTGGATTTCACTCTTGAGGGC
Band lengths:
210-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains