GgaEX1005751 @ galGal4
Exon Skipping
Gene
ENSGALG00000004364 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr19:6328019-6328719:+
Coord C1 exon
chr19:6328019-6328071
Coord A exon
chr19:6328258-6328398
Coord C2 exon
chr19:6328598-6328719
Length
141 bp
Sequences
Splice sites
3' ss Seq
TCCATGCTCACCCCATCCAGGAC
3' ss Score
7.37
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
CGCTGCTGTACAAACCCATTGACCGTGTCACCCGGAGCACCCTTGTTCTGCAC
Seq A exon
GACCTCCTCAAGCACACCCCGTCTGACCACCCCGACTACCCACTGCTGCAGGACGCCCTCCGCATCTCACAGAACTTCCTCTCCAGCATCAATGAGGACATCGATCCTCGGAGGACAGCGGTCACCACTCCCAAGGGGGAG
Seq C2 exon
ACCCGGCAGCTCATCAAGGATGGTTTCTTGGTGGAGCTGTCAGAGGGCTCCCGGAAGCTGCGGCACGTCTTCCTCTTCACCGACGTGCTGCTCTGTGCCAAGCTGAAGAAGACAGCGGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004364-'14-11,'14-9,15-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.213 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(9.0=100)
A:
PF0062115=RhoGEF=PD(16.4=66.0)
C2:
PF0016924=PH=PU(23.4=90.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGCTGTACAAACCCATTG
R:
CCCACCGCTGTCTTCTTCAG
Band lengths:
175-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]