HsaINT1029224 @ hg38
Intron Retention
Gene
ENSG00000159496 | RGL4
Description
ral guanine nucleotide dissociation stimulator like 4 [Source:HGNC Symbol;Acc:HGNC:31911]
Coordinates
chr22:23688136-23688902:+
Coord C1 exon
chr22:23688136-23688305
Coord A exon
chr22:23688306-23688721
Coord C2 exon
chr22:23688722-23688902
Length
416 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
ACTGACACCTCTTGGCCCGGCTC
3' ss Score
-5.39
Exon sequences
Seq C1 exon
ACTTCGTAGGCGATGCTCGAGAGAACAACATGTTCTCCTGCTGTATCCCGACATGCTGCCGACCTCCTCGTCGCACAAGAGGCCAAAATGAGAGTCTTTCCCGAGAATATAGACATTGGTTCAACCCTCACCCTCGACGCCTCTGGCCCTTTGCCAGAAGGCACCCACAG
Seq A exon
GTAACACAGGGCCCAGGGCAGGCCCATCCAGGCTAGGCCTCAGCTGTGCCCATCAGGGCAGCCTCAGGCCCCTCCCCACTTGTTTGGGGGAAACAGGAGATGAGGGGCCCTCCCTGGATAGGAGCAGGTAGGTTGTCAGGTGTTTGGAGCCTGGTAGGTATGTCAGGTTCACAGCCCAGGCAGTGCCTGGCAGGATGGGAAGGTGAGTGTCAAGGACACAGTTTGTCTGCTCAGATCTGAATCCCAAGTCCTCAAGCTGTCATCTGCCGGAGACCTCAGGCTTCTCTGGCTGGAGGTCTATGCAGATGCTCCTATGTGCCAAATCCTGTTGGGGAAGGGGGTGCCAGGGATGAGTTCTAATGGGGGTGTCCCACTGTGGGGTCAGCCAGACAGGCCACTGACACCTCTTGGCCCGG
Seq C2 exon
CTCTCGGGCACTCTCTTTGCAGAGCTCCACACAACAGACCAAACAAGAGCTGTTGGATGGATTCAATTTCTCCATATTCTTCAAAGGGCACGTGCACCACACCACCAACCACGTCCAGTGCCGGTCTGCGGTGAGATTGGGCACAGAAGGGTCTCCACAGACAGGACTTGTGAAAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159496:ENST00000441897:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGCGATGCTCGAGAGAACA
R:
TGGTTTTCACAAGTCCTGTCTGT
Band lengths:
343-759
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains