HsaEX7010791 @ hg38
Exon Skipping
Gene
ENSG00000228315 | GUSBP11
Description
glucuronidase, beta pseudogene 11 [Source:HGNC Symbol;Acc:HGNC:42325]
Coordinates
chr22:23638487-23660000:-
Coord C1 exon
chr22:23659865-23660000
Coord A exon
chr22:23652479-23652576
Coord C2 exon
chr22:23638487-23638942
Length
98 bp
Sequences
Splice sites
3' ss Seq
ACTACCTCCTTTTCGCACAGGTG
3' ss Score
9.19
5' ss Seq
GGTGTGAGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
GATCCACCTCTGATGTTCAGTGAAGACTACCAGAAAAGTCTGCTAGAGCAGTACCATCTGGGTCTGGATCAAAAACTCAGAAAATACGTGGTTGGAGAGCTCATCTGGAATTTTGCCGATTTCATGACTAACCAGT
Seq A exon
GTGGTCACGGACCTCAGGTTGTGGATGTGGCAGACCTGCTTCACGCTCTCGGGCCTCCTCTGGGAGCTCATCAGGACTATGGGGGATTGGGCAGAGGT
Seq C2 exon
GTCAGCCCAAGACTACCCCGTCGGTCATTCTGTTCCTGCCGTCCTGTGAGGAGCCCCAAGCCAACAAGGCCACACTGGTGTGTCTCATGAATAACTTTATCCGGGAATCTTGATGGTGACCTGGAAGGCAGATGGTACCCTCATCACCCAGAGCGTGGAGAAGACCACGCCCTCCAAACAGAGCAACAACAAGTACGTGGCCAGCAGCTACCTGAGCCTGACGCCCGAGCAGTGGAGGTCCCGCAGAAGCTACAGCTGCCAGGTTATGCAAGAAGGGAGCACCGTGGAGAAGTCAGTGGCCCCTGCAGAATGTTCATAGGTTCCAGCCCCCACCCCACCCACAGGGGCCTGGAGCTGCAGGATCCCAGGGGAGGGGTCTCTCTCTGCATCCCAAGCCATTCAGCCCTTCTCGCTGTACCCAGTAAACCCTCAATAAATATCTTTGTCAGCCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000228315-'16-39,'16-29,20-39=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGGTTGGAGAGCTCATCT
R:
GCCTTCCAGGTCACCATCAAG
Band lengths:
180-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains