DreEX6085295 @ danRer10
Exon Skipping
Gene
ENSDARG00000033361 | asl
Description
argininosuccinate lyase [Source:ZFIN;Acc:ZDB-GENE-040426-1152]
Coordinates
chr21:31221173-31221581:+
Coord C1 exon
chr21:31221173-31221229
Coord A exon
chr21:31221316-31221413
Coord C2 exon
chr21:31221504-31221581
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTGGCTCACTTGTCGGATAGGTT
3' ss Score
6.23
5' ss Seq
AGCGTAAGA
5' ss Score
6.21
Exon sequences
Seq C1 exon
GAATTGATTGGTGATGCTGCTGGAAAGCTTCATACTGGCAGGAGCAGAAATGATCAG
Seq A exon
GTTGCAACTGATATGCGACTCTGGTTACGGGATGGTATTGCCACGCTTAAAGAACTGGCTTTGCAACTCATCAACACTATGGTGGAAAGAGCTGCAGC
Seq C2 exon
AGAGATTGAAATCCTGTGCCCAGGATACACTCACATGCAGAGAGCCCAGCCAATCAGATGGAGTCACTGGCTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033361-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(6.1=100)
A:
PF0020615=Lyase_1=FE(10.8=100)
C2:
PF0020615=Lyase_1=FE(11.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATTGATTGGTGATGCTGCTGG
R:
CTGAGAAGCCAGTGACTCCAT
Band lengths:
135-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]