GgaEX6017222 @ galGal4
Exon Skipping
Gene
ENSGALG00000002558 | ASL1
Description
Delta-1 crystallin [Source:UniProtKB/Swiss-Prot;Acc:P02521]
Coordinates
chr19:4949247-4950094:-
Coord C1 exon
chr19:4950038-4950094
Coord A exon
chr19:4949675-4949772
Coord C2 exon
chr19:4949247-4949324
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTCTGACTGTCCAGGTT
3' ss Score
8.11
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
GAGCTGATTGGGGATATAGCTGGAAAGCTGCAGACTGGAAGAAGCAGGAATGAACAG
Seq A exon
GTTGTGACTGATCTGAAACTGCTCCTGAAGAGTTCCATCTCTGTCATCTCCACTCACCTGCTGCAGCTCATCAAGACCCTGGTGGAGCGCGCTGCTAT
Seq C2 exon
AGAAATTGATATTATCATGCCTGGCTACACCCACCTGCAGAAAGCTCTGCCCATCAGATGGAGCCAGTTCCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002558-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
88%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(6.1=100)
A:
PF0020615=Lyase_1=FE(10.8=100)
C2:
PF0020615=Lyase_1=FE(8.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGATTGGGGATATAGCTGGA
R:
AGGAACTGGCTCCATCTGATG
Band lengths:
128-226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]