MmuEX6021313 @ mm10
Exon Skipping
Gene
ENSMUSG00000025533 | Asl
Description
argininosuccinate lyase [Source:MGI Symbol;Acc:MGI:88084]
Coordinates
chr5:130016296-130018604:-
Coord C1 exon
chr5:130018548-130018604
Coord A exon
chr5:130018310-130018407
Coord C2 exon
chr5:130016296-130016373
Length
98 bp
Sequences
Splice sites
3' ss Seq
CGCCCTTCTCCTCTCCACAGGTG
3' ss Score
14.35
5' ss Seq
GGCGTAAGT
5' ss Score
9.39
Exon sequences
Seq C1 exon
GAACTCATCGGTGAAGCTGCAGGGAAGCTACACACAGGACGAAGTCGCAACGACCAG
Seq A exon
GTGGTCACGGACCTCAGGCTGTGGATGAGGCAGACCTGCTCAAAACTCTCCGCCCTCCTCCGGGTGCTCATTGGAACCATGGTCGACCGGGCAGAGGC
Seq C2 exon
GGAACGTGATGTCCTCTTCCCAGGGTACACACACTTGCAGAGAGCTCAGCCCATTCGCTGGAGCCACTGGATCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025533-'13-22,'13-18,15-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(6.1=100)
A:
PF0020615=Lyase_1=FE(10.8=100)
C2:
PF0020615=Lyase_1=FE(10.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTCATCGGTGAAGCTGCA
R:
CTCAGGATCCAGTGGCTCCAG
Band lengths:
135-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types