BtaEX6110039 @ bosTau6
Exon Skipping
Description
Bos taurus argininosuccinate lyase (ASL), mRNA. [Source:RefSeq mRNA;Acc:NM_001034428]
Coordinates
chr25:28251641-28253144:-
Coord C1 exon
chr25:28253088-28253144
Coord A exon
chr25:28252885-28252982
Coord C2 exon
chr25:28251641-28251718
Length
98 bp
Sequences
Splice sites
3' ss Seq
CCAGCTCCTCCTCCCCCCAGGTG
3' ss Score
11.55
5' ss Seq
GGCGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
GAGCTCATTGGTGAAACCGCGGGGAAGCTGCACACGGGACGAAGTCGGAACGACCAG
Seq A exon
GTGGTCACTGACCTCAGGCTGTGGATGCGGCAGAATTGCTCCATGCTCTCAGCCCTCCTCTGCGAACTCATCAGAACCATGGTGGATCGGGCAGAGGC
Seq C2 exon
GGAACGTGATGTCCTCTTCCCAGGGTACACACACCTGCAGAGGGCTCAGCCGATCCGCTGGAGCCACTGGATCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015314-'10-13,'10-11,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(6.1=100)
A:
PF0020615=Lyase_1=FE(10.8=100)
C2:
PF0020615=Lyase_1=FE(8.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTCATTGGTGAAACCGCG
R:
CTCAGGATCCAGTGGCTCCAG
Band lengths:
135-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]