HsaALTA1058554-1/6 @ hg38
Alternative 3'ss
Gene
ENSG00000232653 | GOLGA8N
Description
golgin A8 family member N [Source:HGNC Symbol;Acc:HGNC:44405]
Coordinates
chr15:32602520-32603286:+
Coord C1 exon
chr15:32602520-32602611
Coord A exon
NA
Coord C2 exon
chr15:32603191-32603286
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
ATATTTTGGCTCCAGAGCAGCTT
3' ss Score
-2.46
Exon sequences
Seq C1 exon
GACACGGAGGAGAACATCTGGACAGTGAGGGGGAGGAGGCACCTCAGCCCATGCCGAGTGTCCCAGAGGACCTGGAGAGCAGGGAGGCCATG
Seq A exon
NA
Seq C2 exon
CTTTATGGACCACCTGAAGGAGAAGGCAGACCTGAGTGAGCTGGTGAAAAAACAAGAACTTCGCTTCATTCAATACTGGCAAGAGAGATGCCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000232653-20-45,20-43,20-42,20-41,20-40,20-39-1/6
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(18.5=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGAGGAGAACATCTGGACA
R:
TTCACCAGCTCACTCAGGTCT
Band lengths:
137-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains