HsaEX1031810 @ hg38
Exon Skipping
Gene
ENSG00000262728 | RP11-1000B6.8
Description
NA
Coordinates
chr15:32597639-32603207:-
Coord C1 exon
chr15:32603107-32603207
Coord A exon
chr15:32600604-32600690
Coord C2 exon
chr15:32597639-32597745
Length
87 bp
Sequences
Splice sites
3' ss Seq
GTTCTCATTGTTCTGGACAGAGA
3' ss Score
5.53
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
Exon sequences
Seq C1 exon
TCAGGTGGTCCATAAAGCTGCTCTGGAGCCAAAATATTGCAGTCACATCTCGGCAGCGACCTGCCCTCAGGTGGCATTTTCAAGTCATGGAGAAGGCGGAG
Seq A exon
AGAGAAGCAATCAGCAGCCACCCACTGCAGCTGGAGACCCCAGAACTTGGTGTCTGCCTCCCATGGCACTGGGAAGGCTGGAGGCAG
Seq C2 exon
GAAGAGGAAGACAGAGCTCTTACCAGGGGGAGGCAGAGATGGCACAGCAAGAGACATGCCCCCAGAATGCCACCAATGCCCCAGGACAGGCCCACCCATGGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000262728-'4-5,'4-4,5-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGGTCCATAAAGCTGCT
R:
ATTCTGGGGGCATGTCTCTTG
Band lengths:
168-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains