HsaALTA1058554-3/6 @ hg38
Alternative 3'ss
Gene
ENSG00000232653 | GOLGA8N
Description
golgin A8 family member N [Source:HGNC Symbol;Acc:HGNC:44405]
Coordinates
chr15:32602520-32603286:+
Coord C1 exon
chr15:32602520-32602611
Coord A exon
chr15:32602867-32603190
Coord C2 exon
chr15:32603191-32603286
Length
324 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
TGCTCACATCTTGCCCTCAGGTG
3' ss Score
9.64
Exon sequences
Seq C1 exon
GACACGGAGGAGAACATCTGGACAGTGAGGGGGAGGAGGCACCTCAGCCCATGCCGAGTGTCCCAGAGGACCTGGAGAGCAGGGAGGCCATG
Seq A exon
GTGGCATTTTTCAAGTCCGCTGGAGCTAGTGCCCAGGAGAAGCAGGCACAGTTACAAGAGCAGGTGAAAGAGCAGAGGGTGTGCTGCCAGCGCCTGGCTCACCCGGTGGCCTCGGCCCAGAAGGAGCCAGAGGCGGCCAGAGGCCCTGGAGCCCCAGGGCCTGGGGGCGAGTCTGTGAGTGGGGAGACCCACTGGGCCCTGCAGGAAGTCACGGAGAAGCTGGCCCATGCCAGGACTCACCTCCGCCTTCTCCATGACTTGAAAATGCCACCTGAGGGCAGGTCGCTGCCGAGATGTGACTGCAATATTTTGGCTCCAGAGCAG
Seq C2 exon
CTTTATGGACCACCTGAAGGAGAAGGCAGACCTGAGTGAGCTGGTGAAAAAACAAGAACTTCGCTTCATTCAATACTGGCAAGAGAGATGCCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000232653-20-45,20-43,20-42,20-41,20-40,20-39-3/6
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(18.5=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGGAGGAGAACATCTGGA
R:
GCATCTCTCTTGCCAGTATTGA
Band lengths:
182-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains