HsaALTA1062375-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000268516 | CTD-3138B18.5
Description
NA
Coordinates
chr19:58257270-58278808:-
Coord C1 exon
chr19:58278523-58278808
Coord A exon
chr19:58259692-58259726
Coord C2 exon
chr19:58257270-58259691
Length
35 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
3' ss Seq
TTTTTTTCTGTACTATCCAGGGG
3' ss Score
8.61
Exon sequences
Seq C1 exon
AGGCTGGTGGGGGCGGTGTTGCTCGGGGCTGCGATGCCCCTTAGGTTGCGGGCAACCAGAGGCCTCACTCGTGGGCAGGAAGCAAGGGCGGACCCCGAGAGATGACTGATTGTGGGGGTGGGGACCGTCTGCTCCTCCTAATGGCTGGGGACCGTGCACGTCTGCGCGGGCCGGACCTGCTCTTCTCGGGAACTTGCGCGGGAGGAGGCCCGGAGCTGCGCCGCTTTACCCTCTGCTCCCCGGTGCCTAAAACGCACACGCATCAAAGTCACAGGACGAGTTAGAG
Seq A exon
GGGGGCTCTAAATGTAATCACAAGTGTTCCTATAG
Seq C2 exon
GAGAAAGGCAGAGGGAGATTTGAAACACAGAGGAGGTGATGAGAAGACACAGCAGAAGATATCTGAAGACTGGAAAGAATGCTGCAACCAACAGGAGAAGGAAAAGACAGAAATGTGTTTTCCATTTGGAGCATCCAGAGGGAGCACAACCATATCAACACCTTGATTTTGATCCAGTGACATTGATTTTGGACTTGTGGCCTCCAGAACTTTTAGAGAATAAATTTGCATTGTTTTAAGCCAACAGGTTGGTGGAAATTTTTTACAGCAGCCACAGGAAGCAAACACAGACTCCTAACTGGTGCTTAGTCCTAGAATATCAGTTTCTGTTCCACTTCTGGATCTCATAATTGCATCTCAGACATCAACACTGACTTCATATTCTTAATGCACCAATTCTACCATTTCTTCAGGCTGCAAACAGAGAAAAACTTATTTAAGCATTCCAGAATTGACCCAATAGAAGACTCTCCAGAAAAGACTGCATGGTCTCTGAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000268516-0-14,0-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGCATCAAAGTCACAGGA
R:
TCCTGTTGGTTGCAGCATTCT
Band lengths:
127-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains