HsaALTA1064286-4/4 @ hg38
Alternative 3'ss
Gene
ENSG00000188629 | ZNF177
Description
zinc finger protein 177 [Source:HGNC Symbol;Acc:HGNC:12966]
Coordinates
chr19:9380057-9382185:+
Coord C1 exon
chr19:9380057-9380139
Coord A exon
chr19:9380668-9381147
Coord C2 exon
chr19:9381148-9382185
Length
480 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
3' ss Seq
ACTTACTCCCTTTTCAACAGGCA
3' ss Score
9.39
Exon sequences
Seq C1 exon
ACTGGGAAACTCAACTTAAACCAAAAGATACAATTGCTATGCAGAACATTCCTGGGGGAAAAACATCCAATGGCATAAACACG
Seq A exon
GCAGAAAATCAACCTGGTGAGCACTCCCTGGAGTGTAACCATTGTGGGAAATTCAGAAAGAACACTCGCTTTATTTGTACAAGATATTGCAAGGGAGAGAAATGCTATAAATATATAAAGTATAGCAAAGTCTTCAACCATCCCTCAACTCTTAGGAGTCATGTGAGCATTCACATTGGAGAGAAAACTCTTGAATTTACTGATTGTAGAAAAGCTTTCAATCAAGAGTCATCCCTCAGGAAACACTTAAGAACTCCCACAGGACAGAAGTTTCAGGAGTATGAGCAATGTGATATGTCCTTCAGCCTACACTCTTCCTGCTCAGTACGTGAGCAAATACCTACTGGAGAGAAAGGTGATGAATGCAGTGACTATGGCAAAATATCTCCCCTTAGTGTCCACACAAAAACTGGTAGTGTGGAGGAGGGTTTGGAATGTAATGAACATGAGAAAACTTTCACTGACCCTTTGTCCCTTCAG
Seq C2 exon
AACTGTGTCAGAACTCACTCTGGAGAGATGCCCTATGAATGCAGTGACTGTGGGAAAGCCTTCATTTTTCAGTCTTCCCTTAAGAAACACATGAGATCTCATACTGGAGAGAAGCCTTATGAGTGTGATCACTGTGGAAAATCCTTTAGCCAGAGCTCTCATCTGAATGTGCACAAAAGAACTCACACTGGAGAGAAACCCTATGACTGTAAGGAATGTGGGAAGGCTTTCACTGTTCCTTCATCCCTTCAGAAACATGTGAGAACCCACACTGGAGAGAAACCCTATGAATGCAGTGACTGTGGAAAAGCCTTCATCGATCAGTCATCCCTTAAGAAACACACACGCTCTCACACTGGAGAGAAGCCTTATGAGTGTAACCAGTGTGGAAAGTCCTTCAGCACAGGCTCTTACCTTATTGTGCACAAGAGAACTCACACTGGTGAGAAAACCTATGAGTGTAAAGAATGTGGGAAGGCCTTTAGGAATTCCTCTTGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188629-9-14,9-13,9-12,9-11-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.560 A=NA C2=0.109
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=9.5),PF134651=zf-H2C2_2=WD(100=12.4),PF134651=zf-H2C2_2=WD(100=12.4),PF134651=zf-H2C2_2=WD(100=11.9),PF134651=zf-H2C2_2=WD(100=12.4),PF134651=zf-H2C2_2=WD(100=12.4),PF134651=zf-H2C2_2=WD(100=11.9)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGAACATTCCTGGGGGA
R:
AGGCTTTTCCACAGTCACTGC
Band lengths:
358-838
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains