HsaINT0186312 @ hg38
Intron Retention
Gene
ENSG00000188629 | ZNF177
Description
zinc finger protein 177 [Source:HGNC Symbol;Acc:HGNC:12966]
Coordinates
chr19:9380057-9382185:+
Coord C1 exon
chr19:9380057-9380139
Coord A exon
chr19:9380140-9380667
Coord C2 exon
chr19:9380668-9382185
Length
528 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
3' ss Seq
ACTTACTCCCTTTTCAACAGGCA
3' ss Score
9.39
Exon sequences
Seq C1 exon
ACTGGGAAACTCAACTTAAACCAAAAGATACAATTGCTATGCAGAACATTCCTGGGGGAAAAACATCCAATGGCATAAACACG
Seq A exon
GTAAGACTTACTAGGAAGTATTCCTGGTCTTTGTAGTAGAAGTCTGGGAATCTGAATGAGTTAAAACATCAGCACCCAAAGCAGGGGTAAGAATTCAGGCACCAGGCTTTCACCAGAAAGCTGTCTCGGGAGAGTTTGGAGTTTGATTTTCATGAAATTGGAGAAATCTGTAAACCTAGGTTAACACTTGCTGGCTCACAGAGAATAACCACAAGTAAACATCTATGTAAATATGATTTTAGAGTTAAGTATTTAGTACATAATTCATTCATTCTTCACTCAGTATTAGAAAAACTGTATTAAAGAAGCCCTTTGCTGGGAAGGAATAGAGCCTTGGACAGAGGAGTGAGCTTATTCAACTCGAAAAAGCTAATAGGGCAAAAGTCATACGCACCTACTGAAAATGGTACACATGTCAGTCATGATCATGTGCTTCCTATATATGGCAGAATCCTCATGGAAGAGAATTCCTGTGAATAAGGTGAAAGTGAAAAAGCCTCTAGTCACCACTTACTCCCTTTTCAACAG
Seq C2 exon
GCAGAAAATCAACCTGGTGAGCACTCCCTGGAGTGTAACCATTGTGGGAAATTCAGAAAGAACACTCGCTTTATTTGTACAAGATATTGCAAGGGAGAGAAATGCTATAAATATATAAAGTATAGCAAAGTCTTCAACCATCCCTCAACTCTTAGGAGTCATGTGAGCATTCACATTGGAGAGAAAACTCTTGAATTTACTGATTGTAGAAAAGCTTTCAATCAAGAGTCATCCCTCAGGAAACACTTAAGAACTCCCACAGGACAGAAGTTTCAGGAGTATGAGCAATGTGATATGTCCTTCAGCCTACACTCTTCCTGCTCAGTACGTGAGCAAATACCTACTGGAGAGAAAGGTGATGAATGCAGTGACTATGGCAAAATATCTCCCCTTAGTGTCCACACAAAAACTGGTAGTGTGGAGGAGGGTTTGGAATGTAATGAACATGAGAAAACTTTCACTGACCCTTTGTCCCTTCAGAACTGTGTCAGAACTCACTCTGGAGAGATGCCCTATGAATGCAGTGACTGTGGGAAAGCCTTCATTTTTCAGTCTTCCCTTAAGAAACACATGAGATCTCATACTGGAGAGAAGCCTTATGAGTGTGATCACTGTGGAAAATCCTTTAGCCAGAGCTCTCATCTGAATGTGCACAAAAGAACTCACACTGGAGAGAAACCCTATGACTGTAAGGAATGTGGGAAGGCTTTCACTGTTCCTTCATCCCTTCAGAAACATGTGAGAACCCACACTGGAGAGAAACCCTATGAATGCAGTGACTGTGGAAAAGCCTTCATCGATCAGTCATCCCTTAAGAAACACACACGCTCTCACACTGGAGAGAAGCCTTATGAGTGTAACCAGTGTGGAAAGTCCTTCAGCACAGGCTCTTACCTTATTGTGCACAAGAGAACTCACACTGGTGAGAAAACCTATGAGTGTAAAGAATGTGGGAAGGCCTTTAGGAATTCCTCTTGCCTGAGGGTACACGTGAGAACTCACACTGGAGAGAAGCCTTATAAATGTATTCAGTGTGAAAAAGCCTTTAGCACAAGCACTAACCTTATAATGCACAAGCGAATCCACAATGGCCAGAAACTCCATGAATGAAATGACTCAGGGAAGTGTTTGTTGCCCCTCATGCCTCCTTTCTCACTTTAGAACATATATTGGAGAGAAGCCCTGTTATGGTCACCTGGAAACAGCCTTCTGGCCCAACTCTGGATGCCTGTTATACTGGGACAAACCTTATAAATGTTATAGCTATGATTGTTTTTATCAGTGAGTATTTCATTCTTATATGTGTCACAACTGTAGATCCTATGAATATTTTAGTTATCTTTTCAGTTTAATTGCATTGTGAACAGAACACATGGTCTTCAATATGTAGATTCTGTGTGACATAGATTTGAACATAATTGCTGGACACTGACTGATGTACTGTGGCAGACAGAACTAGTTGCTGTCTCAATATCCATTCCTCCCTTCTTTCTTAAAGTAATAAAATTTACCATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188629:ENST00000589262:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.560 A=NA C2=0.098
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=6.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGAAAAACATCCAATGGC
R:
AGCAGGAAGAGTGTAGGCTGA
Band lengths:
352-880
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains