RnoINT0168217 @ rn6
Intron Retention
Gene
ENSRNOG00000033624 | Zfp426
Description
zinc finger protein 426 [Source:RGD Symbol;Acc:1590942]
Coordinates
chr8:21477329-21480301:-
Coord C1 exon
chr8:21480219-21480301
Coord A exon
chr8:21479643-21480218
Coord C2 exon
chr8:21477329-21479642
Length
576 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
3' ss Seq
GTGTTTATCCCTCTTATCAGCAG
3' ss Score
6.58
Exon sequences
Seq C1 exon
AATGGAAAATACAGCTCGAGACCCAGTGTTCAGCATCCCAGCAGGAGCTTTTGAGGGGTAACATATCCAACGGGATGCAAACG
Seq A exon
GTAAGAATAAAAGATGTCTCTTATTCTCGAGGGATTAAAGGTTAAAGATGTGTCTTTTGTAGAGTACTTACTTGGCATGGTCGAAGCCTTCTGGGAGAGAAAACTAGGGATGTCTTTAAAGGAGATATCGAGAGTAGCAGATAACACACAAGACCAAATGTTTCTGATGAAAACATTGTGCCCCCAATGTGTAATGTAGCTCACTGCTGCAGAACGCACACAATGTGTAATGTAGCTCACTGCTGCAGAACGCACACAATGTGTAATGTAGCTCACCGCTGCAGAACGCACACAATGTGTAATGTAGCTCACCGCTGCAGAACGCACACAATGTGTAATGTAGCTCACCGCTGCAGAACGCACACATCACATCTTTTTCTTGGAGTGGCACAGGAATCTTTTAAGGATTAGAGCAGGTGACTGAGTGATCTGGAGTAAGCATTTAGTCACACCACTGGAGCGTAATTAGCAGAGTATGAACTGCATGTATATAATAAAAATTACAGCGTTTTGTTATGGGACGGTTAAAACCTTACCAGTTGGCTGCAGTAAAATGGTGTTTATCCCTCTTATCAG
Seq C2 exon
CAGACAGGAAGTGACACAGGAAGGGGCCTCTGTGACGGGACACAATATGGAGACTTCTTCAGTGAACTCTCGCCCCTTAGGACGGTTATGAAAACTCGACCTGCACAGGATAATTATGATAGTAGTCAATGCAGGAAAGACTTTCTAATGCTTCAGAGGAAAAAGTGTGCTGGTGAGAAACTTTCTGAGTTCAATCAGAGTGAAGAAACCGGTGCGATCCCAGGTAAAGCTTATCAGAAAATGGCCACACAAGAGAAATGTTTTGAATGCAGTGACTGTGGGAAGTCCTTTATGAATCAGTCACATCTTCAGACACATCAGAGAACTCACAGTGGAGACAAACTTTATGAATTGAATGAGTGTGGGAGAAGTTTTATAAACTCAAGACTTGCTGTGCTTATAGAAACTCTCAATGCAAAGAAACCTCACAGATGTAAGGAGTGTGGGAAAGGCTACCGATACCCTGCGTATCTAAACATTCACATGCGAACCCACACTGGGGAGAAACCCTATGAGTGTAAGGAGTGCGGGAAGGCCTTCAATTATTCCAATTCATTTCAGATCCATGGGAGAACTCACACAGGGGAGAAGCCCTATGTCTGTAATCAGTGTGGGAAAGCCTTCACTCAGCACTCAGGTCTGAGTATACATGTGAGATCGCACAATGGAGACAAGCCCTACGCATGCAAGGAGTGTGGGAAAGCCTTCCTCACATCCTCTCGCCTTATCCAGCATATACGAACTCACACGGGAGAAAAACCTTTTGTATGTGTCAAATGTGGGAAAGCCTTTGCTATTTCTTCAAACCTTAATGGGCATCTGAAAATGCACGCCGAAGAGAAGACCTGTGAGTGCAAGATCTGTGGGAAAGCATTTGGATATCTTTCATGTCTTAATAATCACATGAGAACTCATAATGCCAAAAAATCCTACACATGCAAGGAGTGTGGAAAGGCCTTTAACTATTCCACCCACCTTAAAATTCACATGCGAATCCACACTGGAGAAAAACCCTATGAGTGTAAACAGTGTGGAAAAGCCTTCAGTCATTCCACTTCATTTCAGATCCATGAAAGAACCCACACTGGAGAGAAGCCCTATGAATGCAAGGAGTGTGGCAAAGCCTTCATCTGCCCCAGTTCCTTCAGGATTCATGAAATAAGTCACACCCACACGGAAGAGAAACCCTATAAGTGTCAGCAGTGTGGAAAAGCCTACAGTCACCCTCGTTCACTTCGCAGACATGAAAGAATTCACTAGAGAGAAACCTAGTTGATGGAAGCAAGACAAGAAAGTCCTCAGTTGCGGCCATTTGCTTTGCAGACATGATGGTACTCACACTGGGGAGAAACTGTTGAAGTTAGATCATAGCTTAGAGCAGTGCTGTATGGCTGTACTGAGCAACAAATACTCCATGTCAAAAAATTAAAGCGGCTCAGTGGGTAAAAGCACTTGAATGTGTGGCAACTTGAATTTGACCCACATCCATGTAAAACAGACAGATGTAGTGGCATGCGTCTGTATTCTCAGCATTTCTACAAGAGAGGAGGCAGAGGCAGCAGATTCACCTGGAAGCTTGCGGGCCAGCTAGTCTAGTCTGTGCAGCATGGCAGAGAGGAAGACTCTGCCTCAACAAGGTAGAAGACCTAATGCCTCAACGTTGCCCTCTGGTTTCCATGTGTGTGCCCACTCTCCCACAGATACCACAGTAATAGAAAAATGTTTAAAGAATTGAAAGGAGGGCTGTTGAGATGACTCAGCAGACAGAAGCATTCTCCATTCAATCCTCACTATCCGTTTTCCATCCCTGGATCCCACAGCGTAAGGAGAGAATTGGCTCCTAAAAGCTGCCCTCTGACCTCCACATGAATGCTGTGGCATGCACCCCCCTAATAATATTACATTTTAAAAATTCAAATGAGGGACTGTAGGGATGACTCAGTTACGAGCATCTGCTGCTCTTGCAGAAGACCAGGCTTCAGTTTCCAGCACTCACATGGCGGCTTTCAGCCATCCATAACTAGGTGACGGGAATTTGACCTCTTCTGACCTCAGTGATCACTCAGCATACACATGTGCAGGCAAAATATGTATAAAGCAAAAATAATAAAATGAAGTTGCAATGAATCCATTAAAACTGGCTAATGTCCCCAAGAGGTTAAGATGAAGCAGGAGGAACACAGAGATGACCACGGACCATCAGACATCCTTCTGCAATTACAGACGCTAGCCACCACAAGTGTCTGTACTAAGGCCCCAGAGGAAGCTCCCTGAGGCCTCCAGATTCTAAGAAATAAATAGCCATGTTTGCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033624:ENSRNOT00000038069:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=NA C2=0.076
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF0009621=zf-C2H2=WD(100=5.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGACCCAGTGTTCAGCATC
R:
GACTTCCCACAGTCACTGCAT
Band lengths:
354-930
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]