Special

MmuINT0179240 @ mm9

Intron Retention

Gene
ENSMUSG00000059475 | Zfp426
Description
zinc finger protein 426 [Source:MGI Symbol;Acc:MGI:1920248]
Coordinates
chr9:20272993-20276225:-
Coord C1 exon
chr9:20276143-20276225
Coord A exon
chr9:20275693-20276142
Coord C2 exon
chr9:20272993-20275692
Length
450 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
TTGTTTATCTCTCTTATTAGCAG
3' ss Score
6.57
Exon sequences
Seq C1 exon
AATGGAAATTACAGCTCGAAACCAAATGTTCAGCGTTCCAGCAGGAATTTCTGAGGGGTAACATATCCAGTAGAATGCAAATG
Seq A exon
GTAAGAATAAAAAGTGTGTCTTATTCTTATTCTCAAAGAAAATTAGAGGTTAGAGATGTGTCTTTTATAGAGTACCTACTTGGCATGTTTGAAGCCTTTTGGGGGAGAAAGCTAGGGAGTTCGCTAAAGGAGATTTCGAGAGAAGCAGCTAACACACAGAGCAAATGTCTCTGAAGAAATGATTGTGCCCTCACTGTGCAATGAACCTCACTGCTCCAGAACTCATAAAGCACATCTTTTTCTTGGAGTGGTACAGAAATCTTTTAAAGATGAGAGCAGATGACATAGCAATCTGGAGTTAAGTGTTTTATCACACTACTTGAGACTAATTAACAGAGTATGAACTGTATGCATGTAATGGAAAATAATCATAATTATAGCATTTTGTTATCAAATGGTTAAAACCTTACCAATTGACTGCAGAAAAATGTTGTTTATCTCTCTTATTAG
Seq C2 exon
CAGACAGGAATCAACAGAGGAAGGGAGCTCTGTGATGGGACGCAATATGGAGACTTCTTCAGTGAACTCTCACCCCTCAGGACAGATATGAAAACTCAACCTGCACAGGATAATTATGGTTGTAGTCAGTACAGAAAAGACTTTCTAATGCTTCAGAGGAAAAACTGTGCTGGTGAGAAACTTTCTGAGTTCAGTCAGAGTGAAGAAACCGGCATGACCCCAGTTAAAGAGAAAATTGATACACAAGAGAAAGGGTTTGAATGCAGCGACTGTGGGAAGTCCTTTATGAGCCAGTCACACCTTCAGACACACCAGAGAACTCACAGTGGAGACAAACTTTATGAATGGAATGAGTGTGGGAGAAGTTTTATAAACTCAAGACTTGCTGTGCTTATAGAAACTCTCAATGCAAAGAAACCTCACAGATGTAAGGAATGTGGGAAAGGCTATCGATATCCTGCATATCTAAATATTCACATGCGAACCCACACTGGCGAAAAGCCCTATGAATGTAAGGAGTGTGGGAAAGCCTTCAATTATTCCAATTCATTTCAGATCCATGGAAGAACTCACACAGGAGAGAAGCCCTATGTATGTAGTCAGTGTGGGAAAGCCTTCACTCAGCACTCAGGTCTTAGTATCCATGTAAGGTCTCACACTGGAGACAAGCCCTATGGGTGTAAGGAGTGCGGGAAAGCCTTTCTTACGTCCTCTCGACTGATCCAACATATAAGAACTCACACAGGAGAGAAGCCTTTTGTGTGTGTGAAATGTGGGAAAGCCTTTGCTATTTCTTCCAACCTTAATGGGCATCTGAAGTTGCATGCTGAAGAGAAGACCTGTGAGTGCAAGATTTGTGGGAAAGCATTTGGATATCTTTCATGTCTTAATAACCACATGAGAACTCACAATGCTAAAAAATCATACACGTGCAAGGAATGTGGGAAGGCCTTTAACTATTCCACCCACCTTAAAATTCACATGCGAATCCACACTGGAGAAAAACCCTATGAGTGTAAACAGTGTGGGAAAGCCTTCAGTCACTCCACTTCATTTCAGATCCATGAAAGAACCCACACTGGAGAGAAGCCCTATGAATGTAAGGAGTGTGGGAAAGCCTTCATCTGTCCCAGTTCCTTCAGGATTCATGAAATAAGTCACACCCACACTGAAGAGAAACCCTATAAGTGTCAGCAGTGTGGAAAAGCCTACAGTCATCCTCGTTCACTTCGCAGACATGAAAGAATTCACTAGAGAGAAGCCTAATTGATGGAAGCAATGTGAGGAAGCCCTTGTTTGTGCTCATGTACTTTGAAGACATGATGGTACTCACACTGGGGAGAAACTATGAAAATTAGATACTTAGCTTAGAGCAGTGCTGTGTTGCCATACTGAGCAACACAAATACTCCATGTCAAAAAAATTAAAGTGGATGCTGGCAAGATAGCTCAGTGGGTAAAAGCACTTGATGGAAATGTCTGACAGCTTGAATCTGACCCACACTCACGTAAATCAGACAGATGTAGTGGCATGCATCTGTATTCTCAGCATTCCTACAAGATCACCTGCAACCTTGCAGGCCAGCTAGTTTATGTAGCATGGCAGAGAGGAAGACTGACTCAACAAGGTAGAAGATTTAATGCCTTAAAGTTGACCTCTCATCTCCATGTTTCTGCCCACCCTCCTACATATACCACAGTAATAAAAAAAAATGTTTTTTCAAACAAAAGCATTCTCCATACACTCCTGACTACCCATTTTCTATCCCTGAATCCCACATTGTAAAGAGAGAATTGGCTCCTAAAAAGCTGCCCTCTGACCTCCACATGAATGCTGTGGCATGCACTCCCCCCAATAATAGTACATTTTAAAAATTCAAGTGAGGGACTGCAGAGATGATTGAAATAGTTACAGGCACCTGCTGTACTTTCAGAGAGCCAGGCTTCAGTTCCCAGCACTCACATGGTAGCTTGTAGCCATTCATAACTAGGTGAAGGGGATTTGGGCCCCTTCTGGCCTCTGTGATCACTCAGCATACACATGAGTGCATATGTGCAGGCAAACCATGTATAAAATAAAAATAATAAAAAGCAAATGAGGTTGCCATGAGTCCATTAGAAGTGACTAATGTCCTCAAGAGGTTAAGATGCTGCAGGATGCACACAGAGAAGACCATGGAAACTTCAGACAGCCTTCTGCAAATGGAGACAAGTGGCTACCACAAGTGTTTCTACTAAGGCCTCCAGAGGGAAACTACCTGAATTATGCTGATCTCTGATTTCCAGCTGCCAGATTGTAAGAAATAAATAACCATGTTTAAGTTACTGGTCTATGACTTTGCTGCATTAACTCTAACAAATTGTGTGTGTAAGGAGAGAACTGACTTCCACAAACTGTCCTCTAGTCTCCATGAATACACACTGGCATATTGGCTTATGCACACACACGTGAGAAAAAAAGCCTAGATTTTAAAGTTATTTGTCCTGCATTCTCAACCATTCTATTATTTTTGAAGTCAGTAATTGAAAAGGAGTGACCTTTTGGAGGAGTCTTGTTGCCTTGTTTTTGTTTTGTGGTTTTATTTTGTTGTTTATTTGTTTTAAGATAAGGTTTCTCAATGTAGCCCCGTCTTTCTGTCTGTCCTGGAACTTGCTATTGATCTGCTTGTGTTTCTAAGCTGTGATTTACATATGTGGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059475-Zfp426:NM_146221:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
Alternative protein isoforms





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.064
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
PF0009621=zf-C2H2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF0009621=zf-C2H2=WD(100=5.5)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000127045





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000079250, ENSMUSP00000111224, ENSMUSP00000126446, ENSMUSP00000127914, ENSMUSP00000129727, ENSMUSP00000130945
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr19:9529637-9530984 
LOW PSI
HsaINT0187206
(ZNF426)
Human
(hg19)
chr19:9640313-9641660 
LOW PSI
HsaINT0187206
(ZNF426)
Rat
(rn6)
chr8:21479643-21480218 
LOW PSI
RnoINT0168217
(Zfp426)
Cow
(bosTau6)
chr7:15404965-15405442 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CCAGCAGGAATTTCTGAGGGG

				
R: 
TCTGAAGGTGTGACTGGCTCA

				
Band lengths: 
353-803

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"