HsaINT0187206 @ hg38
Intron Retention
Gene
ENSG00000130818 | ZNF426
Description
zinc finger protein 426 [Source:HGNC Symbol;Acc:HGNC:20725]
Coordinates
chr19:9523224-9531067:-
Coord C1 exon
chr19:9530985-9531067
Coord A exon
chr19:9529637-9530984
Coord C2 exon
chr19:9523224-9529636
Length
1348 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
CATCATCATCCCTTCAACAGGAA
3' ss Score
9.41
Exon sequences
Seq C1 exon
GATGGGAAATGCGACTTGAAACCCAGTGGTCTATACTTCAGCAGGACTTTTTGAGGGGTCAGACATCCATTGGGATACAATTG
Seq A exon
GTAAGATTTGCATAGGATATTTTTTATTTTCCACCCTCAGAGAAAATCAGGAATTCTGTTATGGGAAGTCAGCAAAAATAAGAGATATTTGAGAGAAGTTGCATACACATGAGAGGGAGCAAAGAATTTAGGGATGCTCCAATTGTGAAACTTGTTTCTTTGGAGCTTTCACACATTCCCACAAGTGTAACTAGACGTTGAGTTTTGTTTTGGTGTTTTTTTGAAACGAGATACTGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAATCATGGCTCAGTATAGTCTTGACCTCCTGGGCTCAGGCGATCCTCCCACCTCAGCCTCCCTTGGTAGCTGGGACTACAGGCATGCACCACCACACCCAGCTAATTCTTCAAAATTTTGTGGAGACAGGGTCTTACTGTGTTTCCCAGGCTAGTCTCAAACTCCTGTGCTCAAGTGATCCTCTGCCTCAGTTTACAAAAGTGCTGGGAGTACAGGCATGAGCCACCACATCTGGCTTAGACTATGAATTTTTTTTTTTTGGTCGAGACAAGGTCTTGCTGTGTCACCCAGGCTGGATTGCAGTGGCACAAACATGGCTCACTGAAGCCTTGACCCCTTGGCTCAAGTGATCCTCCCACCTCAGCCTCCTATGTGGTTGGGACTACAGGAACACACCACCATGCCCAGCTAATTTTTTGATATTTTTTATAGAGATGGAGTTTTGCCATGTTGCCCAGGCTGGTCTCTAATTCCTGGGTTCAAATGATCCACCCACCTTTGCCTCCCAAAATGCTGGGATTACAAATGTGAGCTACTGCACCCATCTAGACATTGAATTCTACAGAAATCTGTTATTATTATTATTATTATTATTTTGAGACGGAGTCTCGCTTTGTTGCCCAGGCTAGAGTGCAGTGGTGTGATCTTGGGTCACTGCAACCTCCGCCTCCCAGGTTCAAGCGATTCTTGTGTCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGTGCCACCAAGCCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCATGCTGGTCTTGAACTCCTGACCTCAGGTGATCTGCCCCCCATCGGACTCCCAAAGTGCTGGGATTACAGGCATGAGACACCATGCCTAGCCAAGATTAAAGTAGATGGCACAACATTCTAGAATAAGAGTTAAGTCATACCACTTAAAATAAATCTACAGGGAAGGACCTGAATGCATGTAATAAAAATGGCATCAATTATAATCACCATTATAATGTTTCTAGCTTCAGATGGGTATGTTCTGTTAATATGTTTGAGAAAAATCCTTAAATCATCATCATCCCTTCAACAG
Seq C2 exon
GAAGGAAAACACAATGGAAGGGAACTCTGTGACTGTGAGCAATGTGGAGAAGTCTTCAGTGAACACTCATGCCTTAAGACGCACGTGAGAACTCAAAGTACAGGGAACACTCATGACTGTAATCAGTATGGAAAAGATTTCCTTACCCTGTGTGAGAAAACCTCTACTGGTGAGAAACTTTCTGAGTTTAATCAGAGTGAAAAAATCTTCAGCCTGACACCAAATATTGTATACCAGAGAACTAGCACACAAGAAAAGTCATTTGAATGTAGTCACTGTGGAAAATCCTTCATTAATGAGTCATACCTTCAGGCACATATGAGAACTCACAATGGAGAAAAACTCTACGAATGGAGGAATTATGGGCCAGGTTTTATTGACTCTACAAGCCTTTCTGTGCTTATAGAAACCCTCAATGCAAAAAAGCCCTACAAATGTAAGGAATGTGGAAAAGGCTATAGATACCCAGCCTACCTCAGTATTCACATGCGAACCCACACTGGGGAGAAACCATATGAATGTAAGGAATGTGGGAAAGCCTTCAATTATTCCAACTCATTTCAGATACATGGAAGAACTCACACTGGAGAGAAACCCTATGTATGTAAGGAATGTGGGAAAGCCTTCACTCAGTACTCGGGCCTTAGTATGCATGTACGATCTCACAGTGGAGACAAGCCCTATGAATGTAAGGAATGTGGGAAATCCTTCCTTACATCCTCACGCCTTATTCAACATATAAGAACTCACACTGGAGAGAAGCCTTTTGTATGTGTTGAATGTGGGAAAGCCTTTGCAGTTTCCTCAAATCTTAGTGGACATTTGAGAACTCACACTGAAGAGAAGGCCTGTGAGTGTAAGATATGTGGGAAAGTATTTGGGTATCCCTCATGTCTTAATAATCACATGCGAACGCACAGTGCCCAGAAACCATACACCTGTAAGGAATGTGGGAAGGCTTTTAACTATTCCACCCACCTTAAAATTCACATGCGAATCCACACTGGAGAAAAACCCTATGAGTGTAAACAATGTGGAAAGGCCTTCAGTCATTCCAGTTCATTTCAAATACATGAAAGGACTCACACTGGAGAGAAACCCTATGAATGCAAGGAGTGTGGGAAAGCCTTCACGTGTTCCAGTTCCTTTAGAATTCATGAAAAAACTCACACAGAAGAGAAACCCTATAAATGTCAGCAATGCGGGAAAGCTTACAGTCATCCCCGTTCACTTCGAAGACATGAACAAATTCACTAGTGAGAAACTGTCCATGTAATAAATGTGGGAAAGCTCTCATTTGTTCCAGTTCACTTTAAAGACATGAATGAACTCACTCTGGAGAGAAGAAGCTGCATGAAAATTACTTAATTCCTGTAATCCCAGCATTTTGAGAGGCTGAGGTGGGTGGATCACTTGAGGTCAGGAGTTTGAGACCACCCTGGCCAACATGGTGAAACCTTGTCTCTACTGAAAATACAAAAAATTTAGCCAGGTGTGGTGGGCACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAAGTGAATCACTTGAACCCAGGAAGCAGAGGTTGCAGTGAGCAGAGATCATGCCACTGCACTCCAGCCTGGGCGATGGAGTGAGACTCCATCTCAAAAAAAAAAAAAAAAGAAAATTATTTGATTAAATTGAGTCTGTTAGAGTACATCCCTAATCCAATATGATTGGTGTCCCTATAAGAAGAGAAAGACACAACTGAGACAACAAATAGAAGATGATGTGAAGTCATCAGATGATGGCCATCTGCAAGCCAAAGACAGAGCACTGGGACAGATCCTTCTATCAAAGCCACCAACCCTGCTGGCACCTTCATCTTGGGCTTCCAGAACTTTGAACAAATAAAATTCTCTTGTTTGAGCCACCCAGTCTGTGGTATTTTGTTGTGGTGGCTCTAGCAAGTGAATACAGTAAGCAATAAGCAAAAACGTTTATAGATTGTCCAAAAGCCTTAATATTCACATGCAAAGCCACACTGGAGAGAAACTATATGAATGTAAGACGTGGGAGAGCCTTCATTGAGTCTTCAGTCCTTTCTACATACAGGAGAAATCACATAGGAGAGAAATTGTATGAATGTAAGGAGCATGAAAAAGCCTGTGAATGTTCACTATATTTTAATATTCACATGCAAGTTGTCTGGTCGTAGACCATGTGAAAATAGAGGAGAAAAAAGGAAAGAAAGTTTCTTTTACTGTGAACGCAAGGAATGTGACCCCATACACCATACTGGAACTTGGAGTGGACTGAAATCCCATTAGGATTGTGGAAAAGCTTACATTAATGTTTTCTACCTTCTAGAAGGTGTAAGAAGTCGAACTGGAGAGAAGCCTTTTACCTGTAATGCATGTAGGAAGCCTTACATTAATTCCACAGAATTTTTTTTACACATGTAAAATTACCTCAGAACCCTGGGAAGGTAAGGAATATGGTATAACCTTTAAATATTTCACATGCCATAATAAGTACATGAATTCTGATAATACTGTACCGTTTCTTGAGTAGTGTTAGTACCTTATACTATCAAAATAATCCTAAATCCTCCCTCTCAGACCTTCCATCATTACTATATTTCACTTTTATGCCTATAAACACACACAAATTAGCATATGTAATCTAATACATTGTAGCTATTTTTCAGAAGTTATCAGATCAATTAAGTATTAGAAAAATAAACATTTTTATTTTACCTTCACTTCTTCCTTCTATGCTCAAAGTTGGATGTAATTCTTATACTTGATCCTCAATACTTAAAGCATTTCCCCCCCTCTGGCTTCTATGAAAATTTTTTGTTATCTTTGATATTCTGTTATTTTTAAATGATATGCCTAGGTATAGGTTTTTGGTGCTCGTCCTTCTTGGTGTTTGCTTAGCCTCCTGGATTTGCGTTTTGGTGTCTGAGTTAATTTTGAGAAATTCTGTCATTGTTTCCCTTTTTTTTTCTTTCCATCTGGTATTTCCTTTATATGTAGGATACATCTTTTGTAGTTATCCCACAGTTCTTATATCTTGTTTTTTTATTCTTCTCTTTGCTTTTCAGGTGTGGATGTTTCTGCTGATATATTCTCAAGCTCTTTAGTTGGCTGTTTCTTGGCCAATAATAAGCCTACCAAAGACATTCTTCATTTCTGTTACACTGTCTTCAATTTCTAGCATTTCTTTGTGGTTCTTAGAATTTCCATCTCTGTGTTTACACTGCCTGTCTGTTCTTGGATGCTGTCTGCTTTATCCAGTAGAACCCATGGCATATCAATCATAATTGTTTTAAATTCCCAGTCTGATAATTTCAGCAATCCTGCTATATCTGGTTCTGGTTCTTACTCTTTCTCTTTAAACTAACTTTTGCCTTTTAGTATGCTTGTAATTTTTCCTTAGCTGGACATGGCATACTGGATAAGAGGAAATGCTGTAAGCAGGCCTCTAGTAATCATGATAAGCTGTGGGGAGAGGGGCAGCATTCTATTGTCCAGGGATTAGATGTCAGTCTTGCAGTGAGTCTGTGCTTCTGCACTGTGAACTTCAGTTTTTCCCACCCTTTAGTTGGGTCAGGATGTATAGAGTTGGCTGGAGTTGGATATTTCCCTTCCTCCAGGTCACTGAAGCTCTGACTAAAACTCCAGGTGTGGTGGCTTATGCCTGTAATACCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACCTGAGGTTGGGAGTTCATGACCAGCCTGAATTGCTTGAATCCAGGAGGTGGAGGTCACAGTGAGCCGAGATTGTGATACTGCACTCCAGCCTGGGAAACAGTGAGACACTGTCTCAAAAAAATAAATAAATAAATAAAAGGCTAGGCGCAGTGGCTCAACCCTGTAATCCCAGCACTTTGGGAGGCAGAGGTGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCTGGGTGTGGTGGCGGGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGTGTGAACCCAGGAGGTGGAGCTTGCAGTGAGCCGAGATCACGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCTGTCTCAAAACAACAACAACAACAACAACAACAAAAACCCATCATCAATGCTCAGCCTTTCTTAAACATGAACTCATGGTGGACAGAGCCCTATGAATGTAAGGAATATAGAGAAGCCATCACTAGTTACTCAAACCTTATTGAATGTGTGAAAATTTACTCTGGAGAGATGCCCTTTCAGCATAAGAAATGTTGAAAAGGATTTATATAATCCTTCCTTTTTATTTTTATTTTTATTTTTATTTTTATTTTTATTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCTACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACTGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCAGCCAATCCTTCCTTTTTAATATCCACATACAAACTCACTGAAGAAAAACCCTGAAAATGTAAAGCAATGTTGAAAAACCTAGTTATTTAAATTCATTTCAAGTATATGAACTCACATGGTAAAGAAACCCTGTGAATATAAGTAGTATGATAAATTCTTGAATTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGCAGAGTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCTCAATCTTGGCTCACTACAACCTCTATCACCCAGGTTCAAGTGATTATTCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGTACCACCATGCCCAGCTAATTTTGTATTTTTAGTGAAGGCAGGGATTCTCCATGTTGATCAGGCTGGTCTCGAACTCCTGACCTCCAGTGATCTGCCTGGTTTGACCTCCCAAAGTGCTGAGATTACAGGCATGAGCCATCACGCCCAGCCAGTTCTTCAATTCTTACAGTCCCTTTCCATGTCATTAAAGAACTCACACTGGAGAGAAATCTTATCAATGTTAGAATTGTGGTAAAGCTCTCTGTTGTTCCCATTTACATGAAAGATGTGAACAGTCACATTGTAGAAAAATGCTGTGAGAGTTGGGAATCTGGAACCACTTCTTTATTATCTCAGGTCATAATGAACTTGTAAGAATTCACAGTGGCAGGAAACCCTATGTAAATGGAAAATATGGGAAAGGCTTCATTTAATCCATAGGACTGATACCACAAAACTCCCACTAGGAGAAAACCTATGTTTATACGGAATGTGGGAAAATCTTCACTTATTTCTCAAGCCTTAAAGTGTATGTCAGGATTCCCAGTGGAGAGAAGCCATATTGATGTAAGGAATGTGGGAAAGCCCTTGCCTGCCACTTAGTCCTTGATAAACATTTTAGAACACAAACTGGAGAGAAACTATGAATTCAAGGATTGTGGGAAAACCCTTTTATGTTCCACAAGCTTTAATATTCATATGCAATGTATGCTGGAGAATAACTTGATGACTATAATAAGTGGAATGGCCTAGGTCAGGGATCCCCAAACCCCTGGGCCATGGACTGGTACTGGTCTGTGGCCTGCTAGGATCCAGGGTGCACAGCAGGAGGTGAATGTAGGATGAGCAAACATTACTGCCTGAGCTCAACTTTCTGTCAGATCAGCAGTGGCATTAGATTCTCATAGGAGCATGAACTTTATTGTGAACTGCACATGCAAGGGATCTAGGTTGCACACTCCTTATGAGAATCTAATGCCTGATGATCTGAACTGGAACAGTTTAATCCCCAACTCCAGTCCGTGGGAAAAATGTCTTCCACGAAACTGGTCCCTGGTGCCAAAAAGTTAGGGGACCACTGATTTAGATTATGTCACATGTCCCATCCACTCATTAACATTAAGGCTTTCATCCCTGGGACCTCAAGATAATGGTGGTATTTAGAGATGTGGTTTTTTAAAGAGGTGATTTTAAAATGAGGCAGTTAGAATGGGGCCCTCATTCAATATGACTGGTTTCCTTATAAGAAGTGAAAGAGATACCAGGGTAGCAGGCACAGAATTTTATGTGAAGTGACCGGAAATGGTTACCTTCAAGGCAAAGAGAGATTCCTGGAGGAGATCCTTCTTTTAAGGCTCATTATAGAGGAAATCATCCTTATCTACACTTTGATCCTGGACTTCCAGCCTCAAAAATTATGAGCAAATAAATTTCTGTTGTTTAAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130818:ENST00000253115:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.024
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGTCAGACATCCATTGGG
R:
TGTGCCTGAAGGTATGACTCA
Band lengths:
347-1695
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains