MmuINT0179240 @ mm10
Intron Retention
Gene
ENSMUSG00000059475 | Zfp426
Description
zinc finger protein 426 [Source:MGI Symbol;Acc:MGI:1920248]
Coordinates
chr9:20468549-20471781:-
Coord C1 exon
chr9:20471699-20471781
Coord A exon
chr9:20471249-20471698
Coord C2 exon
chr9:20468549-20471248
Length
450 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
TTGTTTATCTCTCTTATTAGCAG
3' ss Score
6.57
Exon sequences
Seq C1 exon
AATGGAAATTACAGCTCGAAACCAAATGTTCAGCGTTCCAGCAGGAATTTCTGAGGGGTAACATATCCAGTAGAATGCAAATG
Seq A exon
GTAAGAATAAAAAGTGTGTCTTATTCTTATTCTCAAAGAAAATTAGAGGTTAGAGATGTGTCTTTTATAGAGTACCTACTTGGCATGTTTGAAGCCTTTTGGGGGAGAAAGCTAGGGAGTTCGCTAAAGGAGATTTCGAGAGAAGCAGCTAACACACAGAGCAAATGTCTCTGAAGAAATGATTGTGCCCTCACTGTGCAATGAACCTCACTGCTCCAGAACTCATAAAGCACATCTTTTTCTTGGAGTGGTACAGAAATCTTTTAAAGATGAGAGCAGATGACATAGCAATCTGGAGTTAAGTGTTTTATCACACTACTTGAGACTAATTAACAGAGTATGAACTGTATGCATGTAATGGAAAATAATCATAATTATAGCATTTTGTTATCAAATGGTTAAAACCTTACCAATTGACTGCAGAAAAATGTTGTTTATCTCTCTTATTAG
Seq C2 exon
CAGACAGGAATCAACAGAGGAAGGGAGCTCTGTGATGGGACGCAATATGGAGACTTCTTCAGTGAACTCTCACCCCTCAGGACAGATATGAAAACTCAACCTGCACAGGATAATTATGGTTGTAGTCAGTACAGAAAAGACTTTCTAATGCTTCAGAGGAAAAACTGTGCTGGTGAGAAACTTTCTGAGTTCAGTCAGAGTGAAGAAACCGGCATGACCCCAGTTAAAGAGAAAATTGATACACAAGAGAAAGGGTTTGAATGCAGCGACTGTGGGAAGTCCTTTATGAGCCAGTCACACCTTCAGACACACCAGAGAACTCACAGTGGAGACAAACTTTATGAATGGAATGAGTGTGGGAGAAGTTTTATAAACTCAAGACTTGCTGTGCTTATAGAAACTCTCAATGCAAAGAAACCTCACAGATGTAAGGAATGTGGGAAAGGCTATCGATATCCTGCATATCTAAATATTCACATGCGAACCCACACTGGCGAAAAGCCCTATGAATGTAAGGAGTGTGGGAAAGCCTTCAATTATTCCAATTCATTTCAGATCCATGGAAGAACTCACACAGGAGAGAAGCCCTATGTATGTAGTCAGTGTGGGAAAGCCTTCACTCAGCACTCAGGTCTTAGTATCCATGTAAGGTCTCACACTGGAGACAAGCCCTATGGGTGTAAGGAGTGCGGGAAAGCCTTTCTTACGTCCTCTCGACTGATCCAACATATAAGAACTCACACAGGAGAGAAGCCTTTTGTGTGTGTGAAATGTGGGAAAGCCTTTGCTATTTCTTCCAACCTTAATGGGCATCTGAAGTTGCATGCTGAAGAGAAGACCTGTGAGTGCAAGATTTGTGGGAAAGCATTTGGATATCTTTCATGTCTTAATAACCACATGAGAACTCACAATGCTAAAAAATCATACACGTGCAAGGAATGTGGGAAGGCCTTTAACTATTCCACCCACCTTAAAATTCACATGCGAATCCACACTGGAGAAAAACCCTATGAGTGTAAACAGTGTGGGAAAGCCTTCAGTCACTCCACTTCATTTCAGATCCATGAAAGAACCCACACTGGAGAGAAGCCCTATGAATGTAAGGAGTGTGGGAAAGCCTTCATCTGTCCCAGTTCCTTCAGGATTCATGAAATAAGTCACACCCACACTGAAGAGAAACCCTATAAGTGTCAGCAGTGTGGAAAAGCCTACAGTCATCCTCGTTCACTTCGCAGACATGAAAGAATTCACTAGAGAGAAGCCTAATTGATGGAAGCAATGTGAGGAAGCCCTTGTTTGTGCTCATGTACTTTGAAGACATGATGGTACTCACACTGGGGAGAAACTATGAAAATTAGATACTTAGCTTAGAGCAGTGCTGTGTTGCCATACTGAGCAACACAAATACTCCATGTCAAAAAAATTAAAGTGGATGCTGGCAAGATAGCTCAGTGGGTAAAAGCACTTGATGGAAATGTCTGACAGCTTGAATCTGACCCACACTCACGTAAATCAGACAGATGTAGTGGCATGCATCTGTATTCTCAGCATTCCTACAAGATCACCTGCAACCTTGCAGGCCAGCTAGTTTATGTAGCATGGCAGAGAGGAAGACTGACTCAACAAGGTAGAAGATTTAATGCCTTAAAGTTGACCTCTCATCTCCATGTTTCTGCCCACCCTCCTACATATACCACAGTAATAAAAAAAAATGTTTTTTCAAACAAAAGCATTCTCCATACACTCCTGACTACCCATTTTCTATCCCTGAATCCCACATTGTAAAGAGAGAATTGGCTCCTAAAAAGCTGCCCTCTGACCTCCACATGAATGCTGTGGCATGCACTCCCCCCAATAATAGTACATTTTAAAAATTCAAGTGAGGGACTGCAGAGATGATTGAAATAGTTACAGGCACCTGCTGTACTTTCAGAGAGCCAGGCTTCAGTTCCCAGCACTCACATGGTAGCTTGTAGCCATTCATAACTAGGTGAAGGGGATTTGGGCCCCTTCTGGCCTCTGTGATCACTCAGCATACACATGAGTGCATATGTGCAGGCAAACCATGTATAAAATAAAAATAATAAAAAGCAAATGAGGTTGCCATGAGTCCATTAGAAGTGACTAATGTCCTCAAGAGGTTAAGATGCTGCAGGATGCACACAGAGAAGACCATGGAAACTTCAGACAGCCTTCTGCAAATGGAGACAAGTGGCTACCACAAGTGTTTCTACTAAGGCCTCCAGAGGGAAACTACCTGAATTATGCTGATCTCTGATTTCCAGCTGCCAGATTGTAAGAAATAAATAACCATGTTTAAGTTACTGGTCTATGACTTTGCTGCATTAACTCTAACAAATTGTGTGTGTAAGGAGAGAACTGACTTCCACAAACTGTCCTCTAGTCTCCATGAATACACACTGGCATATTGGCTTATGCACACACACGTGAGAAAAAAAGCCTAGATTTTAAAGTTATTTGTCCTGCATTCTCAACCATTCTATTATTTTTGAAGTCAGTAATTGAAAAGGAGTGACCTTTTGGAGGAGTCTTGTTGCCTTGTTTTTGTTTTGTGGTTTTATTTTGTTGTTTATTTGTTTTAAGATAAGGTTTCTCAATGTAGCCCCGTCTTTCTGTCTGTCCTGGAACTTGCTATTGATCTGCTTGTGTTTCTAAGCTGTGATTTACATATGTGGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059475:ENSMUST00000115562:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.064
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF0009621=zf-C2H2=WD(100=5.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCAGGAATTTCTGAGGGG
R:
TCTGAAGGTGTGACTGGCTCA
Band lengths:
353-803
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types