HsaINT0187206 @ hg19
Intron Retention
Gene
ENSG00000130818 | ZNF426
Description
zinc finger protein 426 [Source:HGNC Symbol;Acc:20725]
Coordinates
chr19:9638681-9641743:-
Coord C1 exon
chr19:9641661-9641743
Coord A exon
chr19:9640313-9641660
Coord C2 exon
chr19:9638681-9640312
Length
1348 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
CATCATCATCCCTTCAACAGGAA
3' ss Score
9.41
Exon sequences
Seq C1 exon
GATGGGAAATGCGACTTGAAACCCAGTGGTCTATACTTCAGCAGGACTTTTTGAGGGGTCAGACATCCATTGGGATACAATTG
Seq A exon
GTAAGATTTGCATAGGATATTTTTTATTTTCCACCCTCAGAGAAAATCAGGAATTCTGTTATGGGAAGTCAGCAAAAATAAGAGATATTTGAGAGAAGTTGCATACACATGAGAGGGAGCAAAGAATTTAGGGATGCTCCAATTGTGAAACTTGTTTCTTTGGAGCTTTCACACATTCCCACAAGTGTAACTAGACGTTGAGTTTTGTTTTGGTGTTTTTTTGAAACGAGATACTGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAATCATGGCTCAGTATAGTCTTGACCTCCTGGGCTCAGGCGATCCTCCCACCTCAGCCTCCCTTGGTAGCTGGGACTACAGGCATGCACCACCACACCCAGCTAATTCTTCAAAATTTTGTGGAGACAGGGTCTTACTGTGTTTCCCAGGCTAGTCTCAAACTCCTGTGCTCAAGTGATCCTCTGCCTCAGTTTACAAAAGTGCTGGGAGTACAGGCATGAGCCACCACATCTGGCTTAGACTATGAATTTTTTTTTTTTGGTCGAGACAAGGTCTTGCTGTGTCACCCAGGCTGGATTGCAGTGGCACAAACATGGCTCACTGAAGCCTTGACCCCTTGGCTCAAGTGATCCTCCCACCTCAGCCTCCTATGTGGTTGGGACTACAGGAACACACCACCATGCCCAGCTAATTTTTTGATATTTTTTATAGAGATGGAGTTTTGCCATGTTGCCCAGGCTGGTCTCTAATTCCTGGGTTCAAATGATCCACCCACCTTTGCCTCCCAAAATGCTGGGATTACAAATGTGAGCTACTGCACCCATCTAGACATTGAATTCTACAGAAATCTGTTATTATTATTATTATTATTATTTTGAGACGGAGTCTCGCTTTGTTGCCCAGGCTAGAGTGCAGTGGTGTGATCTTGGGTCACTGCAACCTCCGCCTCCCAGGTTCAAGCGATTCTTGTGTCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGTGCCACCAAGCCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCATGCTGGTCTTGAACTCCTGACCTCAGGTGATCTGCCCCCCATCGGACTCCCAAAGTGCTGGGATTACAGGCATGAGACACCATGCCTAGCCAAGATTAAAGTAGATGGCACAACATTCTAGAATAAGAGTTAAGTCATACCACTTAAAATAAATCTACAGGGAAGGACCTGAATGCATGTAATAAAAATGGCATCAATTATAATCACCATTATAATGTTTCTAGCTTCAGATGGGTATGTTCTGTTAATATGTTTGAGAAAAATCCTTAAATCATCATCATCCCTTCAACAG
Seq C2 exon
GAAGGAAAACACAATGGAAGGGAACTCTGTGACTGTGAGCAATGTGGAGAAGTCTTCAGTGAACACTCATGCCTTAAGACGCACGTGAGAACTCAAAGTACAGGGAACACTCATGACTGTAATCAGTATGGAAAAGATTTCCTTACCCTGTGTGAGAAAACCTCTACTGGTGAGAAACTTTCTGAGTTTAATCAGAGTGAAAAAATCTTCAGCCTGACACCAAATATTGTATACCAGAGAACTAGCACACAAGAAAAGTCATTTGAATGTAGTCACTGTGGAAAATCCTTCATTAATGAGTCATACCTTCAGGCACATATGAGAACTCACAATGGAGAAAAACTCTACGAATGGAGGAATTATGGGCCAGGTTTTATTGACTCTACAAGCCTTTCTGTGCTTATAGAAACCCTCAATGCAAAAAAGCCCTACAAATGTAAGGAATGTGGAAAAGGCTATAGATACCCAGCCTACCTCAGTATTCACATGCGAACCCACACTGGGGAGAAACCATATGAATGTAAGGAATGTGGGAAAGCCTTCAATTATTCCAACTCATTTCAGATACATGGAAGAACTCACACTGGAGAGAAACCCTATGTATGTAAGGAATGTGGGAAAGCCTTCACTCAGTACTCGGGCCTTAGTATGCATGTACGATCTCACAGTGGAGACAAGCCCTATGAATGTAAGGAATGTGGGAAATCCTTCCTTACATCCTCACGCCTTATTCAACATATAAGAACTCACACTGGAGAGAAGCCTTTTGTATGTGTTGAATGTGGGAAAGCCTTTGCAGTTTCCTCAAATCTTAGTGGACATTTGAGAACTCACACTGAAGAGAAGGCCTGTGAGTGTAAGATATGTGGGAAAGTATTTGGGTATCCCTCATGTCTTAATAATCACATGCGAACGCACAGTGCCCAGAAACCATACACCTGTAAGGAATGTGGGAAGGCTTTTAACTATTCCACCCACCTTAAAATTCACATGCGAATCCACACTGGAGAAAAACCCTATGAGTGTAAACAATGTGGAAAGGCCTTCAGTCATTCCAGTTCATTTCAAATACATGAAAGGACTCACACTGGAGAGAAACCCTATGAATGCAAGGAGTGTGGGAAAGCCTTCACGTGTTCCAGTTCCTTTAGAATTCATGAAAAAACTCACACAGAAGAGAAACCCTATAAATGTCAGCAATGCGGGAAAGCTTACAGTCATCCCCGTTCACTTCGAAGACATGAACAAATTCACTAGTGAGAAACTGTCCATGTAATAAATGTGGGAAAGCTCTCATTTGTTCCAGTTCACTTTAAAGACATGAATGAACTCACTCTGGAGAGAAGAAGCTGCATGAAAATTACTTAATTCCTGTAATCCCAGCATTTTGAGAGGCTGAGGTGGGTGGATCACTTGAGGTCAGGAGTTTGAGACCACCCTGGCCAACATGGTGAAACCTTGTCTCTACTGAAAATACAAAAAATTTAGCCAGGTGTGGTGGGCACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAAGTGAATCACTTGAACCCAGGAAGCAGAGGTTGCAGTGAGCAGAGATCATGCCACTGCACTCCAGCCTGGGCGATGGAGTGAGACTCCATCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130818-ZNF426:NM_024106:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.024
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGTCAGACATCCATTGGG
R:
TGTGCCTGAAGGTATGACTCA
Band lengths:
347-1695
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)